Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 3e-13 seq18 82.4 4e-11 seq9 82.4 4e-11 seq6 82.4 4e-11 >seq2 Length=88342039 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | | || |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 87735906 AAAATAACTAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 87735847 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||| |||||| Sbjct 87735846 GCTCTAACCAACTGAGCTAACCGGCCGT 87735819 Score = 86.0 bits (94), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || | |||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 85740597 AAAAGCACAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 85740538 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 85740537 TCTAACCAACTGAGCTAACCGGCC 85740514 >seq18 Length=37194005 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 17839491 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 17839432 Query 11528 CC 11529 || Sbjct 17839431 CC 17839430 >seq9 Length=57367160 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 37048352 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 37048411 Query 11528 CC 11529 || Sbjct 37048412 CC 37048413 >seq6 Length=67274854 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 50831528 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 50831469 Query 11528 CC 11529 || Sbjct 50831468 CC 50831467 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261472406709172