Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq17 165 1e-35 seq11 132 7e-26 seq2 98.7 1e-15 >seq17 Length=38284538 Score = 165 bits (182), Expect = 1e-35 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 || || |||||||| | || |||||| || || ||||||||||| |||||||| || Sbjct 12839048 GCGCTGTTGACGATGTCGAAGCCCACGCTGCCTCCAAAGGTGCTGGGCTTCCAGTACTCC 12838989 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 |||||||||||| ||| |||| ||||||||||| || || ||||| |||| ||| | Sbjct 12838988 GGGGAGCAGATGGGATTCCCCATCAGGCCTTTGAGTGAGAAAGGAGCGCCCATCTCCACC 12838929 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 || |||| ||||||||||||||||| ||||| || ||||||| | || | ||| | | Sbjct 12838928 ATCGTCTCCCCGAAGATGGCGTTGGGTCGGGGTTTCTCCACCAGCAGACCAGGGTAGAGC 12838869 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| || || | || ||||| | || || |||||| ||||| ||||| ||| Sbjct 12838868 TCCACGGCATCTACATCACCGTACATCTCCTCCAGCAAGGCAGCCATTTCTTTTTCGCCT 12838809 Query 8975 G 8975 | Sbjct 12838808 G 12838808 Score = 138 bits (152), Expect = 2e-27 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| ||||||||| | |||||| || ||| ||||||| ||| ||||| || Sbjct 12837495 TCACCAATAAGGATGAGTCGGGAGGTCTGGAAGAGTCTTTCGTCATCCCAGTCTGGGTGG 12837436 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||| || || || || | ||||||||| | ||||||||| || ||||||||| Sbjct 12837435 ACTTCCTTCAGGACGTCACAAACCCGGTTGTGTTCACGGAGCCAGATGGTGGCGTACATC 12837376 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| ||||| ||||| || || ||||| || ||||| ||||| ||| | || || Sbjct 12837375 ATGAGTCCAGGGACCAGACCGAAGGCCTCATGGCCGACGGCCAGGCGCTGAGAGTCTGGG 12837316 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | || || ||| ||| | || ||||| ||||| | || || |||| || Sbjct 12837315 ACATGAGGGGGGTAGTGCATTTCAACACCCACATCCTTGACTGTTGGAGGGTACACCTCT 12837256 Query 9850 CCGT 9853 |||| Sbjct 12837255 CCGT 12837252 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 10053 GTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAACTGGTGCGTGAAATGTTGGCCA 10112 ||||| ||||| || | || ||||| |||| |||||||||||||| ||||| || Sbjct 12836958 GTGAAAGCCGGTCCGTTCTTCATATCAGATTTAAAGAACTGGTGCGTGAAGTGTTGTGCA 12836899 Query 10113 AAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGAGTGAAGGTCCTCC-GAAGAAG 10171 || ||||||||||| ||| |||| ||||| || || ||| |||| | |||| | | | Sbjct 12836898 AAGAAGGCAAACATCAAGCTGGTACCCTGTGGGTCTGGAATGAACTTTCTCCTCACCAGG 12836839 Query 10172 AGTTTTT--TCCACAACGTGTGCCGCATCCGGCAGAttttttttACCTGG 10219 || || | | | ||| | | |||||||||| | |||||||||||| Sbjct 12836838 AGCTTCTCAGCTAAAACCT---TCACATCCGGCAGCTCTTTTTTACCTGG 12836792 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | ||| ||||| ||||| || || || || || || | || | Sbjct 12836514 TCACCTACGACTCCCATAGGGGTTGGGCAATCCTGCGGCACAGGTGGGAGGGCACGTGTG 12836455 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| || |||||| | |||||||| ||| || | || | || ||||| || Sbjct 12836454 TAGTAGGACAGGTTGGAGTAGGCTTCCCAACTTTTATAACCATAATGAGCATTGTAAGTG 12836395 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTG 10437 |||||||||||||||| | ||||| | ||| Sbjct 12836394 GGAGGGCTGTCAATCATGTGGGATCGAGCTG 12836364 >seq11 Length=48234189 Score = 132 bits (146), Expect = 7e-26 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 ||||| |||||||||| ||||| || ||||| || || || ||| |||||||||| Sbjct 116587 CCGATGATGATGAGTCTGGTGGTTTGGAACAGCTGCTCATCGTCCCACGTTGGATGTTCT 116528 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||| | ||||| ||||||||||| ||||| | |||||| || |||||||| || Sbjct 116527 GTCTTCAGGATGTCGCAGACTCTGTTGTGCTCCCTCAACCAGATGGTGGCGTACATGGTG 116468 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCA-- 9790 || || |||| ||||| || |||| ||||||| ||||||||| | ||||| | Sbjct 116467 AGGCCCGGCAGGAGGCCGAACACCTCCTGACCGATGGCCAGACGCTGCTCATCGGGGAAG 116408 Query 9791 -CTTCGGGAGGATAGATCATGTGCACCTGGACATC 9824 |||| ||| || | ||||||||| |||| || Sbjct 116407 CCTTC---AGGGTACACCATGTGCACAGGGACCTC 116376 Score = 113 bits (124), Expect = 6e-20 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||||| |||| |||| ||| || || | | ||||| | |||| ||| Sbjct 118357 ACGGACACCATTTGGTGTTGAGACACACCAGCTTCCTCAAAGTTGACGTTTTGATGATGT 118298 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 || || || || || ||||||||||| |||||||| | |||||| |||| || Sbjct 118297 TGAAGCCTGTCTCGCCTCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGTTGATGGGGT 118238 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | | | |||||||| | ||| || ||||| |||| ||| | ||||||||||| || | Sbjct 118237 TTCCGAACAGGCCTTTCAAGGAGAAAGGAGCACCCATCTCCACCATGCTCTCACCAAAAA 118178 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 || | |||||| | || |||| || || || | || ||||||| ||| || |||| Sbjct 118177 TGCAGCCGGGACGAGTTTTCTCCAGCAGGAGACCTGGATAAAACTCCAGAGCATCAATGT 118118 Query 8931 CTCCGTAAAG 8940 ||||||| || Sbjct 118117 CTCCGTAGAG 118108 >seq2 Length=88342039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| |||||||| ||||||||||| || || || ||||| ||| || ||| Sbjct 62082819 TCACCGATGATGATGAGGCGAGTGGTCTGGAAAAGCTGCTCGTCGTCCCAGGTGGGGTGT 62082760 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| |||||| | || || || | |||||| ||||||||||| | ||||| ||||| Sbjct 62082759 TCTGATTTCAGGATTTCACAGACCCGGTTGTGCTCCCTGAGCCACAGCGTAGCATACATT 62082700 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 | || || | || || || |||| ||||| | |||| | | | | || Sbjct 62082699 CCCAATCCTGGAAGGAGTCCGAACACCTCCTGACCAATGGCCATCTGGTTCTGGACAGGG 62082640 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || || ||||| ||| |||| || | |||| || |||||||| ||||| || Sbjct 62082639 ACGTCTGGAGGGTAGCTCATCCTGACGGGTGCATCAACCACAGAGGGGGGGTACATCTCT 62082580 Query 9850 CCGTCAATAATCTG 9863 || ||||||| ||| Sbjct 62082579 CCATCAATAACCTG 62082566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708472572865680