Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 >seq11 Length=48234189 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || |||| |||| || | ||| | || || ||||| || | ||| || || Sbjct 21620117 CATTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 21620176 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||| || ||||| || || ||||||| | || ||||||||||| Sbjct 21620177 TGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 21620236 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 || || ||||| ||||| | || || || ||||| | | |||||| | ||| | Sbjct 21620237 GGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCA-CTTGGCT 21620295 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| || | |||||||| ||||||||||| || || ||||||||||||||| Sbjct 21620296 CGACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCATG 21620348 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| || | ||| | || || ||||| || | ||| || || Sbjct 37620534 CCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 37620593 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||||||||| || ||||||| | || ||||| || ||||| Sbjct 37620594 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 37620653 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| ||||| | || || || || ||| ||| |||||| | ||| || || Sbjct 37620654 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCA-CTTGGCTCAAC 37620712 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 || | |||||||| || ||||| || || || ||||||||||||||| || || Sbjct 37620713 CTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGCA 37620767 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || |||| |||| || | ||| | || || ||||| || | ||| || || Sbjct 37620302 CATTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 37620361 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||| || ||||| || || ||||||| | || ||||||||||| Sbjct 37620362 TGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 37620421 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 || || ||||| ||||| | || || || ||||| | | |||||| | ||| | Sbjct 37620422 GGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCA-CTTGGCT 37620480 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || | |||||||| || ||||| || || || |||||||||||||||| Sbjct 37620481 CGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGC 37620534 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| || || |||| |||| || | ||| | || || ||||| || | ||| | Sbjct 21619885 TTTACTGCCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGT 21619944 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | ||| || ||||| || || ||||||| | || ||||||| Sbjct 21619945 AGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 21620004 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||| ||||| | || || || ||||| | | |||||| | | Sbjct 21620005 CTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCA-CTT 21620063 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || | |||||||| ||||| || || || || |||||||||||||| Sbjct 21620064 GGCTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCAT 21620119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258155334920