Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 607 1e-168 seq4 111 2e-19 seq11 82.4 1e-10 >seq6 Length=67274854 Score = 607 bits (672), Expect = 1e-168 Identities = 1303/1942 (67%), Gaps = 13/1942 (1%) Strand=Plus/Plus Query 62271 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62330 || ||||| ||||| || |||| | |||| || | || | || || || ||| Sbjct 22087148 CTGTTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGA 22087207 Query 62331 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390 ||||| | || || |||||||| | || || |||||||| || || ||||| || | | Sbjct 22087208 TTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCT 22087267 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | ||||| || || |||| || || || || || || || ||||| || || | | Sbjct 22087268 TCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGC 22087327 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62510 | | |||||||| | || | | | ||| || ||||| || | | ||| | ||| Sbjct 22087328 AGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCAC 22087387 Query 62511 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 62570 || || | || ||| || || || || ||| | || Sbjct 22087388 AGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAA 22087447 Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| | || || ||||| ||||| || ||||||| || || |||||||| | ||| Sbjct 22087448 CCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCA 22087507 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 |||| || ||||| || || |||| | ||||| || || || |||| || || Sbjct 22087508 GCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAG 22087567 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62750 |||||| | || || || || || || || |||||||| ||||| || || || || Sbjct 22087568 GGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTG 22087627 Query 62751 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62810 || | ||| || || | |||||||| |||| || || || || || || || | || Sbjct 22087628 TGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTTG 22087687 Query 62811 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62870 ||||| ||| ||||||| |||||| |||| ||| || || ||||| || Sbjct 22087688 TTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAAGTCCGT 22087747 Query 62871 TCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT-- 62925 ||| | || ||||||| | |||| || || || ||||| || || ||||| | Sbjct 22087748 TCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCT 22087807 Query 62926 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 62985 | || | || | | | || ||||| || || || || ||||| || || | || Sbjct 22087808 TTGCTGGTG--TACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGAT 22087865 Query 62986 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63045 | || || |||||||| ||||||| ||||| || || || ||| |||| || || |||| Sbjct 22087866 TCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTT 22087925 Query 63046 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTAT 63104 | |||| || || ||||| || | ||||| | || ||||||| | | | || Sbjct 22087926 CTGTCTGGGACTCAATAATGGCATACCAGAGCTGCT-GAGCCTTCACCACACGCTTCACC 22087984 Query 63105 CTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63164 |||| || |||| ||| || |||| | ||| ||||| || ||||| | |||| Sbjct 22087985 CTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCC 22088044 Query 63165 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63224 | |||||||| || | |||||||| | ||||| | | || | || ||||| ||| Sbjct 22088045 AGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTC 22088104 Query 63225 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63283 || || ||||| |||||||| || || ||| || || ||||||| ||| || ||||| || Sbjct 22088105 ATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTT 22088163 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 |||||| ||||| || || || ||||| | | | |||| | ||||| || |||| ||| Sbjct 22088164 TCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTA 22088223 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 ||||| | ||||||| | |||||| || |||||||| | || | ||| || || || Sbjct 22088224 CATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTT 22088283 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 |||||||||||||| || | | ||||| || ||||||||||||| | ||| ||||| Sbjct 22088284 GTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCT 22088343 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 || | | | ||| || | | | || || || || || ||| || || | Sbjct 22088344 CCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAG 22088403 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || || | || | |||||||| || || || ||||| || || ||||| || || Sbjct 22088404 GGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAG 22088463 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 || ||||| |||| || | || | ||||| || || || | ||| || || ||||| Sbjct 22088464 GAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTG 22088523 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 || ||||| || || || || || |||||||||||||| |||| || || || | | Sbjct 22088524 GGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTC 22088583 Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763 ||| || || || | || | ||| | ||||||||| || | || | | || || Sbjct 22088584 ATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATT 22088643 Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 || |||| || ||||| |||| ||||| || || || ||||||| || || || Sbjct 22088644 GATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATC 22088703 Query 63824 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGT 63883 || |||||||| || |||| ||||| || || | | ||| || | | || Sbjct 22088704 TCTGTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGTTGAGCGT 22088763 Query 63884 GATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63943 |||| || || || || || | | || |||||| | |||||| | | || Sbjct 22088764 CTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATGTAGTTGTACAGGTC 22088823 Query 63944 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 64003 ||||||||||||||||| | |||||| || || ||||| || ||||| || || || || Sbjct 22088824 TTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAGCGATCCT 22088883 Query 64004 GGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGC 64063 ||||| ||||||||||| || || |||| || || ||||| || ||||||||||| Sbjct 22088884 TGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTTCGGCTGC 22088943 Query 64064 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGC 64123 ||| ||||| | || || || || || || | || | || || || |||||||| | Sbjct 22088944 CAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATTGT 22089003 Query 64124 TATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCT-AATACGAG 64182 |||| | ||||| | ||| | |||| || || || || |||| || |||| Sbjct 22089004 GATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGGATGCGAG 22089062 Query 64183 ACGTGATTTTATCAAACATGAC 64204 | |||||||||||||||||||| Sbjct 22089063 AGGTGATTTTATCAAACATGAC 22089084 >seq4 Length=75030901 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 61466148 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61466089 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||||||||| || || || ||||||||||| || || |||||||||| Sbjct 61466088 TCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61466029 Query 33446 C 33446 | Sbjct 61466028 C 61466028 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||| || || || || ||||||||||| || || |||||||||| Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61475893 Query 33446 C 33446 | Sbjct 61475894 C 61475894 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || || ||||||| || || ||||| || || |||||||| || ||||| ||||| || Sbjct 61465732 TAGGTGTCGATCAGCAGGCTGTACATCTCAGAGTGAATGTTCTCCATGGCGATCTGGAAA 61465673 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 |||||||| ||||| || || | ||||||||||| Sbjct 61465672 CCGTAGAAGCATCTGGCTTCTGGTATCTGTACTTC 61465638 >seq11 Length=48234189 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 ||||| || || | ||| || || ||||| || ||||| || || || || | ||||||| Sbjct 16877663 CCCGCGTTGAACAGGGTGGGGGACGCGTGGGTGAACCACTTCTCTGACAGCAAATTGTAC 16877604 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 ||||||||||| | || | || | | |||||| || |||| || | ||| | |||| Sbjct 16877603 GTCTCAATAGCCGCATCGACGTCTCCCTTATGAATCCCCACTGACACTCTCATCAGCATG 16877544 Query 63735 TGCTGAGGTCTTTCA 63749 ||||| || || ||| Sbjct 16877543 TGCTGGGGCCTCTCA 16877529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622901281004520