Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 192 2e-43 seq11 87.8 5e-12 seq8 86.0 2e-11 >seq6 Length=67274854 Score = 192 bits (212), Expect = 2e-43 Identities = 582/887 (66%), Gaps = 18/887 (2%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||||| | | | || || |||||||| ||| | ||| | || || |||| ||| Sbjct 22088646 ATCAATGGAAAAGTGGCCGAGCGTCCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATC 22088587 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTAT 363547 ||| || | ||||| || ||||| || || || || || || | ||| | Sbjct 22088586 CATGAGAGAGACATCGATGCAGCCATTGAGACGTACAACCTGCTGTCAGAGAA-GTGG-T 22088529 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 |||| |||||| | ||||| | | ||| || ||||| |||||| |||| | Sbjct 22088528 TCACCCACGCCTCACCAACCCTCTTCAACGCAGGAACCAACCGGCCACAGCTGTCCAGCT 22088469 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 |||| || || ||||| ||||| |||||| || || | |||||| |||||| | | Sbjct 22088468 GCTTCCTCCTCGCCATGAAAGACGACAGCATCGAAGGCATTTATGACACTCTTAAGCAGT 22088409 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCAC 363727 |||| || |||||||| || || || ||||| || || || | | | | || Sbjct 22088408 GTGCCCTCATTTCCAAATCCGCCGGAGGCATTGGCGTGGCGGTCAGCTGTATCAGATCAA 22088349 Query 363728 AGAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 || ||||| ||| || || || |||| || |||||||| |||||| | | Sbjct 22088348 CCGGGAGCTACAT-CGCTGGTACCAATGGTAACTCCAACGGGCTGGTGCCCATGTTGAGA 22088290 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGT 363844 || | |||||||||| | || || || ||||| || | |||| | || || | Sbjct 22088289 GTTTACAACAATACTGCTCGCTATGTTGATCAGGGGGGGAACAAAAGACCT--GGAGCCT 22088232 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| ||||| || ||||| || ||| | ||||| || || ||||| ||| | Sbjct 22088231 TTGCCATGTACCTGGAGCCATGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGA 22088172 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||| ||||| ||||| | | || | || || |||||||| || ||| || | || | Sbjct 22088171 ACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTCTTCTATGCCCTGTGGATTCCAGATC 22088112 Query 363965 ATTTTATGAAGCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||| | |||||| | | || || ||||| || | || || |||| ||| Sbjct 22088111 TGTTCATGAAGAGAGTGGAGAGTAACCAA-AACTGGTCCCTAATGTGTCCCAACGAGTGT 22088053 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || ||| ||||| || || | || || ||| || |||||| Sbjct 22088052 CCTGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAAAAACTGTACACTAAATATGAAAAC 22087993 Query 364084 GAGGGAAAGGCT---CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 ||||| | || ||| | | || ||| |||| |||| |||||| || || Sbjct 22087992 GAGGGGAGGGTGAAGCGTGTGGTGAAG---GCTCAGCAGCTCTGGTATGCCATTATTGAG 22087936 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 || |||| || || ||||| || || ||| ||||||||||| | || ||| | ||| Sbjct 22087935 TCCCAGACAGAAACGGGAACGCCATACATGCTGTACAAAGATGCATGTAACAGGAAGAGT 22087876 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||||||| | || || || || | |||||||| || ||||| || |||| ||| Sbjct 22087875 AACCAGCAGAATCTGGGCACCATCAAATGCAGCAACCTGTGCACCGAAGTTGTTGAGTAC 22087816 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||| |||||| || || ||||||||||| || || || || Sbjct 22087815 ACCAGCAAAGACGAGGTGGCGGTGTGTAACCTTGCCTCCATTGCTCT 22087769 >seq11 Length=48234189 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 |||||||||||| |||| || ||||| ||| | || | ||||| ||| | || || Sbjct 16878186 GGGGCGTTTGCTGTGTACCTGGAGCCGTGGCATTCAGACGTGTTTGACTTTTTGGAACTG 16878245 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| |||||||| |||||||| ||| || | |||||||||| ||||| ||| | Sbjct 16878246 AAGAAGAACACGGGCAAAGAGGAGCAGCGGGCCAGAGATCTGTTCTTCGCACTGTGGATC 16878305 Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983 | |||| |||||||| || ||||| Sbjct 16878306 CCAGACCTCTTTATGAAACGAGTGGA 16878331 >seq8 Length=57680405 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||||| || || || ||| ||| ||| | |||||||||| || || || || Sbjct 19730595 ACAAATGCCAAGGAGCTGTCAGACAAAGGTGTGAGGATTTGGGATGCCAACGGGTCCCGG 19730654 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCG-ACAACGAAGAAGGTGATCTCGGACCAGTTTA 111508 | |||||| || | | || ||| || ||| || || || ||||| ||||| || || Sbjct 19730655 GCCTTTCTGGACAAACTGGG-CTTCACGGACAGAGAGGAGGGGGATCTGGGACCTGTGTA 19730713 Query 111509 CGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 ||| || || ||| | |||||||||||||| |||||| |||||| Sbjct 19730714 CGGTTTCCAGTGGAGGCACTTTGGTGCAGAGTACAAAGATATGCAC 19730759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303255124711454