Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 136 4e-27 seq11 111 1e-19 seq4 82.4 7e-11 >seq6 Length=67274854 Score = 136 bits (150), Expect = 4e-27 Identities = 922/1462 (63%), Gaps = 52/1462 (4%) Strand=Plus/Plus Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 ||| ||| ||| | |||||||| || |||||||| || ||||| | || |||||||| Sbjct 22087259 GTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATC 22087318 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 || | || | ||| | || ||| || || ||| | || || ||| | Sbjct 22087319 GGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTC 22087378 Query 145229 CAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 || ||||| || || ||| || ||||||||||||||| |||| ||||||| |||| Sbjct 22087379 CAGTCCCACAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTG 22087438 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG-GCGAGCTCGCAACTCGC 145347 | ||| |||| ||| ||| | | || || | || |||||||| ||||| Sbjct 22087439 ACAGGGGAACCTTCGTAGGTCTCGTA-CGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGC 22087497 Query 145348 CTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATC 145407 ||||||||| || | || || ||||| ||| || |||| |||| | || || Sbjct 22087498 CTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGG 22087557 Query 145408 GCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| ||| | || |||| ||| | || ||||| || | || || | ||| | || Sbjct 22087558 GCTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCC 22087617 Query 145468 GATGGGCCGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTA 145522 || |||| || | ||||| |||| | || ||| | ||| | | |||| Sbjct 22087618 TATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTT-GATT- 22087675 Query 145523 CGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTT 145580 || || | || || | |||| || | || || || | |||| | ||| | Sbjct 22087676 ---TCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGATGCC--AGCTTCT 22087730 Query 145581 CAAAGTCAAA---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCA 145637 |||||||| ||| | | || ||| ||| | |||| || || || || | Sbjct 22087731 TGAAGTCAAAAGTCCGTTC-TGGTGT--GACGT-ACA--TGTTGAGAGCAATGGAGGCAA 22087784 Query 145638 AATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGC 145697 ||||| || ||| ||| || | | |||| | || | |||| ||||| |||| Sbjct 22087785 GGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGC 22087844 Query 145698 TACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGA 145757 | ||||||||||| |||||||| ||||| ||||| |||||||| || || || ||||| | Sbjct 22087845 TGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACA 22087904 Query 145758 GCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCT 145814 ||||||| || || || || ||| | ||| | || | | | | || | || Sbjct 22087905 GCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGC---TGCT 22087961 Query 145815 GCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 | || |||| ||| | ||||| | ||| ||||| |||| || | |||| Sbjct 22087962 GAGCCTTCACCACACGCTTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAA 22088021 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || | || |||| ||| ||| || ||||||| |||||||||||| || ||||| Sbjct 22088022 ACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGT 22088081 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 ||| | || | || ||| |||| |||||| | |||||| || || | | || Sbjct 22088082 TTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAGAAGAGGT 22088141 Query 145995 CGC--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGAT 146052 | | || || ||| ||||| || |||| ||||| | || | | | | Sbjct 22088142 CTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACAC 22088199 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTG 146109 || |||||| || || | || | ||| | |||||| || |||| || ||||| Sbjct 22088200 ATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTG 22088259 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 || || | || | | ||||| | || | || ||||||| | | ||| ||| Sbjct 22088260 ATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTT 22088319 Query 146170 GCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAG 146229 || || ||| || | | ||| || | | || || |||||| | Sbjct 22088320 ACCATTGGTACCAGCGATGTAGCTCCCGGTTGATCTGATACAGCTGACCGCCACGCCAAT 22088379 Query 146230 ACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAAT 146289 || ||| || | ||||| || ||| || | || || || || ||||| || || Sbjct 22088380 GCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGAT 22088439 Query 146290 GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCC 146347 ||| ||| | ||| |||| || ||||| | ||| ||| | | ||| || || Sbjct 22088440 GCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGC--CGGTTGGTTCCT 22088497 Query 146348 GCCGAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGT 146406 || ||| | || || ||||| || || || || || | || || ||||| Sbjct 22088498 GCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTACGT 22088556 Query 146407 TTCGATAGCGTCTTGAATGTCGTCGC-CATGAATGCCCAAAGCGACGCGCATGAGCATGT 146465 || || || | | ||||| || | |||| || || | || || | ||||||||||| Sbjct 22088557 CTCAATGGCTGCATCGATGTC-TCTCTCATGGATCCCAACAGACACCCTCATGAGCATGT 22088615 Query 146466 GTTGGGGCCGCTCCGCCACTT---GATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGG 146522 | || || ||||| ||||||| |||| ||||| | || |||| | |||||||| Sbjct 22088616 GCTGCGGACGCTCGGCCACTTTTCCATTG---ATCTTCAGCAGATAGGAGCGCTCCAGGG 22088672 Query 146523 TTTTGTATCCGAAAAATTTGTA 146544 ||||| | ||||| || ||||| Sbjct 22088673 TTTTGAAGCCGAAGAAGTTGTA 22088694 >seq11 Length=48234189 Score = 111 bits (122), Expect = 1e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| ||||| | ||||| |||||| |||| ||||| ||||| || ||||| | Sbjct 16878773 TGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGGT 16878714 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| ||||||||||||||||||||||| || || || ||||| Sbjct 16878713 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCCGGTTTCTGTCTGCG 16878654 Query 145788 TCTCCACGATA 145798 ||| | |||| Sbjct 16878653 ACTCGATGATA 16878643 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | || | ||| |||||||| ||||||||||| || Sbjct 37620306 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 37620365 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | |||||| || || ||| Sbjct 37620366 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 37620425 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || |||| | ||| | || || | | ||||| Sbjct 37620426 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 37620485 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| ||||| || || || || || || ||||||||| Sbjct 37620486 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATG 37620533 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | || | ||| |||||||| ||||||||||| || Sbjct 21620121 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21620180 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | |||||| || || ||| Sbjct 21620181 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620240 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || |||| | ||| | || || | | ||||| Sbjct 21620241 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 21620300 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || || || || || || || || |||||||||| Sbjct 21620301 TCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCATGA 21620349 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | || | ||| |||||||| ||||||||||| || Sbjct 21619893 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21619952 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | |||||| || || ||| Sbjct 21619953 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620012 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || |||| | ||| | || || | | ||||| Sbjct 21620013 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 21620072 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 21620073 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCAT 21620119 >seq4 Length=75030901 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/152 (72%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 46153 GAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCC 46212 |||||| ||||||||||||| |||||||| |||| || || || ||||| ||| Sbjct 61475906 GAGCGTGTGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTTGCTGCC 61475847 Query 46213 ATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATA 46272 ||||| | | || | | |||| | |||||||| ||||| || ||||||||||| || Sbjct 61475846 ATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATC 61475787 Query 46273 TCGCGCGACGAGG-GCCTGCATACGGACTTTG 46303 | ||||||| | | | || |||| |||| Sbjct 61475786 AGCAGAGACGAGGTGACCGAATGCGGAGTTTG 61475755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471978006756480