Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 616 2e-171 seq11 87.8 2e-12 >seq6 Length=67274854 Score = 616 bits (682), Expect = 2e-171 Identities = 1305/1942 (67%), Gaps = 13/1942 (1%) Strand=Plus/Plus Query 62126 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62185 || ||||| ||||| || |||| | |||| || | || | || || || ||| Sbjct 22087148 CTGTTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGA 22087207 Query 62186 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245 ||||| | || || |||||||| | || || |||||||| || || ||||| || | | Sbjct 22087208 TTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCT 22087267 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | ||||| || || |||| || || || || || || || ||||| || || | | Sbjct 22087268 TCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGC 22087327 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62365 | | |||||||| | || | | | ||| || ||||| || | | ||| | ||| Sbjct 22087328 AGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCAC 22087387 Query 62366 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 62425 || || | || ||| || || || || ||| | || Sbjct 22087388 AGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAA 22087447 Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || ||||| ||||| || ||||||| || || |||||||| | ||| Sbjct 22087448 CCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCA 22087507 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 |||| || ||||| || || |||| | ||||| || || || |||| || || Sbjct 22087508 GCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAG 22087567 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 |||||| | || || || || ||||| || |||||||| ||||| || || || || Sbjct 22087568 GGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTG 22087627 Query 62606 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62665 || | ||| || || | |||||||| |||| || || || || || || || | || Sbjct 22087628 TGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTTG 22087687 Query 62666 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62725 ||||| ||| ||||||| |||||| |||| ||| || || ||||| || Sbjct 22087688 TTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAAGTCCGT 22087747 Query 62726 TCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT-- 62780 ||| | || ||||||| | |||| || || || ||||| || || ||||| | Sbjct 22087748 TCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCT 22087807 Query 62781 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 | || | || | | | || ||||| || || || || |||||||| || | || Sbjct 22087808 TTGCTGGTG--TACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGAT 22087865 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | || || |||||||| ||||||| ||||| || || || ||| |||| || || |||| Sbjct 22087866 TCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTT 22087925 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTAT 62959 | |||| || || ||||| || | ||||| | || ||||||| | | | || Sbjct 22087926 CTGTCTGGGACTCAATAATGGCATACCAGAGCTGCT-GAGCCTTCACCACACGCTTCACC 22087984 Query 62960 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019 ||| || |||| ||| || |||| | ||| ||||| || ||||| | |||| Sbjct 22087985 CTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCC 22088044 Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || |||||||| || | |||||||| | ||||| | | || | || ||||| ||| Sbjct 22088045 AGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTC 22088104 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63138 || || ||||| |||||||| || || ||| || || ||||||| ||| || ||||| || Sbjct 22088105 ATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTT 22088163 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 |||||| ||||| || || || ||||| | | | |||| | ||||| || |||| ||| Sbjct 22088164 TCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTA 22088223 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | ||||||| | |||||| || |||||||| | || | ||| || || || Sbjct 22088224 CATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTT 22088283 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 |||||||||||||| || | | || ||||| |||||||||| || | ||| ||||| Sbjct 22088284 GTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCT 22088343 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 || | | | ||| || | | | || || || || || ||| || || | Sbjct 22088344 CCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAG 22088403 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || | || | || ||||| ||||| || || || || || ||||| || || Sbjct 22088404 GGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAG 22088463 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 || ||||| |||| || | || | ||||| || || || | ||| || || ||||| Sbjct 22088464 GAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTG 22088523 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 || ||||| || || || || || |||||||||||||| |||| || || || | | Sbjct 22088524 GGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTC 22088583 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 ||| || || || | || | ||| | ||||||||| || | || | | || || Sbjct 22088584 ATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATT 22088643 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || |||| || ||||| |||| ||||| || || || ||||||| || || || Sbjct 22088644 GATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATC 22088703 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 63738 || |||||||| || |||| ||||| || || | | ||| | | | || Sbjct 22088704 TCTGTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGTTGAGCGT 22088763 Query 63739 AATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC 63798 |||| || || || | || | | || |||||||| |||||| | | || Sbjct 22088764 CTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATGTAGTTGTACAGGTC 22088823 Query 63799 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 63858 ||||||||||||||||| | |||||| || |||||||| || ||||| || || || || Sbjct 22088824 TTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAGCGATCCT 22088883 Query 63859 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGC 63918 ||||| ||||||||||| || || |||| || || ||||| || ||||||||||| Sbjct 22088884 TGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTTCGGCTGC 22088943 Query 63919 CAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGC 63978 ||| ||||| | || || || || ||||| | || | || ||||| |||||||| | Sbjct 22088944 CAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATTGT 22089003 Query 63979 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAG 64037 |||| | ||||| | ||| | |||| || || || || |||| || |||| Sbjct 22089004 GATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGGATGCGAG 22089062 Query 64038 ATGTGATTTTATCAAACATGAC 64059 | |||||||||||||||||||| Sbjct 22089063 AGGTGATTTTATCAAACATGAC 22089084 >seq11 Length=48234189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| || || || ||||| || | || || || | Sbjct 16876973 CACTGAATACTTTCTTGGTTTCTTTGTGCAGGTTGGACACGGCAATACGTGCTGCCAGGA 16876914 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || ||||||| || || ||||| || | || || |||| ||||||| Sbjct 16876913 TTGCATAGTCAGGATGTTTAGTGGTGAGGGTGGCGGCCGTCTCTGCAGCCAAGGTGTCCA 16876854 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || || | || | || ||||| |||||||| Sbjct 16876853 GTTCCACGGTGGTGACGCCGCTGTACAGACCCTGGATCACCTTCAT 16876808 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 ||||| || || | ||| || || ||||| || ||||| || || || || | ||||||| Sbjct 16877663 CCCGCGTTGAACAGGGTGGGGGACGCGTGGGTGAACCACTTCTCTGACAGCAAATTGTAC 16877604 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 ||||||||||| | || | || | | |||||| || |||| || | ||| | |||| Sbjct 16877603 GTCTCAATAGCCGCATCGACGTCTCCCTTATGAATCCCCACTGACACTCTCATCAGCATG 16877544 Query 63590 TGCTGAGGTCTTTCA 63604 ||||| || || ||| Sbjct 16877543 TGCTGGGGCCTCTCA 16877529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633585293401200