Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq11 105 6e-18 seq6 105 6e-18 >seq11 Length=48234189 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || ||||| || |||| || || || || | | Sbjct 37620532 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCAAGT 37620473 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || |||||||| || || || || ||||| Sbjct 37620472 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 37620413 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| |||| || |||||| Sbjct 37620412 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 37620353 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 37620352 ATTCAGAAGGAGTCCACC 37620335 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || | | Sbjct 21620119 ATGCAGATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGCCAAGT 21620060 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || |||||||| || || || || ||||| Sbjct 21620059 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 21620000 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| |||| || |||||| Sbjct 21619999 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 21619940 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 21619939 ATTCAGAAGGAGTCCACC 21619922 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || | | Sbjct 21620347 ATGCAGATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTCGAGCCAAGT 21620288 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || |||||||| || || || || ||||| Sbjct 21620287 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 21620228 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| |||| || |||||| Sbjct 21620227 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 21620168 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 21620167 ATTCAGAAGGAGTCCACC 21620150 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| || || || | ||||| ||| || |||||||||||||| | || || | Sbjct 16878773 TGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGGT 16878714 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 | || ||| ||||||| || || ||||| | |||||||||||| || ||||| Sbjct 16878713 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCCGGTTTC 16878662 >seq6 Length=67274854 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 129688 TTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACA 129747 |||| | ||| ||||| | || || || || |||| |||| ||||||| ||| Sbjct 22087766 TTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACA 22087825 Query 129748 ATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATG 129807 | ||||| ||||| || || ||| |||||||||| || || || ||||| ||| || Sbjct 22087826 ACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTG 22087885 Query 129808 TTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || || ||||||||||||| |||||| ||||| |||||||| Sbjct 22087886 TTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTC 22087926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419697834279805