Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq526 96.9 7e-15 seq6 96.9 7e-15 seq19 91.5 3e-13 seq17 91.5 3e-13 seq15 91.5 3e-13 seq12 91.5 3e-13 seq10 91.5 3e-13 seq9 91.5 3e-13 seq8 91.5 3e-13 seq3 91.5 3e-13 seq1 91.5 3e-13 >seq526 Length=158403 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 || ||||||||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 125548 GAAATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT 125489 Query 142558 TCGAGCCCCACATCGGGC 142575 ||||||||||| | |||| Sbjct 125488 TCGAGCCCCACGTTGGGC 125471 >seq6 Length=67274854 Score = 96.9 bits (106), Expect = 7e-15 Identities = 223/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 293895 ACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCC 293954 |||||| || ||| || || ||||||||| |||| || | || ||||| |||| Sbjct 22087789 ACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCA 22087848 Query 293955 CTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTG--TCTTTGTTGAGG 294012 |||||||||||| ||| ||| | |||| || ||| || ||||||| || Sbjct 22087849 TTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTT-ACA-TGCATCTTTGTACAGC 22087906 Query 294013 ACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACATCGCGAGCC 294072 | |||||| | |||||||| |||| | | |||| | ||||| | ||||| Sbjct 22087907 ATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCTGAGCC 22087966 Query 294073 TTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCC 294132 |||||||| ||||| || ||||||| ||||| || ||||| || | ||| | ||| Sbjct 22087967 TTCACCACACGCTTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCC 22088026 Query 294133 TTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGAGACCACTGGGC 294191 | || | || ||| ||||| ||||||| ||| || | ||| ||||| | Sbjct 22088027 TCCCCCCAGCACTCGTCCAGCCCAGGACACTCGT-TGGGACACATTAGGGACCAGTTTTG 22088085 Query 294192 ATCAGTCTCCACGCGCTTCATGAATAGATC 294221 | | ||||||| | ||||||||| ||||| Sbjct 22088086 GTTACTCTCCACTCTCTTCATGAACAGATC 22088115 >seq19 Length=25483538 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 8781743 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 8781684 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 8781683 CCCCACGTTGGGC 8781671 >seq17 Length=38284538 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9316668 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9316609 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9316608 CCCCACGTTGGGC 9316596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9319915 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9319856 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9319855 CCCCACGTTGGGC 9319843 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9320558 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9320499 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9320498 CCCCACGTTGGGC 9320486 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 24980323 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAAGGTCGTGGGTTCGAGC 24980264 Query 142564 CCCAC 142568 ||||| Sbjct 24980263 CCCAC 24980259 >seq15 Length=41915801 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 29200018 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 29199959 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 29199958 CCCCACGTTGGGC 29199946 >seq12 Length=46076542 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 10343822 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAAGGTCGTGGGTTCGAGC 10343763 Query 142564 CCCAC 142568 ||||| Sbjct 10343762 CCCAC 10343758 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 13729423 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAAGGTCGTGGGTTCGAGC 13729364 Query 142564 CCCAC 142568 ||||| Sbjct 13729363 CCCAC 13729359 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 42480171 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 42480112 Query 142564 CCCAC 142568 ||||| Sbjct 42480111 CCCAC 42480107 >seq10 Length=57197669 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 8036647 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8036588 Query 142564 CCCAC 142568 ||||| Sbjct 8036587 CCCAC 8036583 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 11276991 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 11276933 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 11276932 TCGAGTCCCGGCAGAGA 11276916 >seq9 Length=57367160 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 44779973 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAAGGTCGTGGGTTCGAGC 44779914 Query 142564 CCCAC 142568 ||||| Sbjct 44779913 CCCAC 44779909 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 23887468 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 23887527 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 23887528 TCCCGGCAGAGA 23887539 >seq8 Length=57680405 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 20226019 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAAGGTCGTGGGTTCGAGC 20225960 Query 142564 CCCAC 142568 ||||| Sbjct 20225959 CCCAC 20225955 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 51828045 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAAGGTCGTGGGTTCGAGC 51827986 Query 142564 CCCAC 142568 ||||| Sbjct 51827985 CCCAC 51827981 >seq3 Length=76488725 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1113954 GCCCGACTAGCTCAGTCGGTAGAGCGATAGACTCTTAATCTCAAGGTCGTGGGTTCGAGC 1113895 Query 142564 CCCAC 142568 ||||| Sbjct 1113894 CCCAC 1113890 >seq1 Length=98476147 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 78477118 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 78477059 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 78477058 CCCCACGTTGGGC 78477046 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 71686449 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 71686390 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 71686389 CCCACGTTGGGC 71686378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027759141469377