Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11 170 4e-37 seq4 93.3 8e-14 >seq11 Length=48234189 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| |||| || | ||| || |||||||| || |||||||| || || ||| Sbjct 37620534 CCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 37620593 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || || || || ||||| || || Sbjct 37620594 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 37620653 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| || || ||| |||||||||||| || || || Sbjct 37620654 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAACC 37620713 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || |||||||||||||| || |||||||| Sbjct 37620714 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620760 Score = 167 bits (184), Expect = 4e-36 Identities = 181/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 68223 TGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATG 68282 ||| |||| | || || | || |||| || | ||| || |||||||| || || ||| Sbjct 21619881 TGACTTTACTGCCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATG 21619940 Query 68283 TTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGT 68342 || || || ||||| || | |||||||| | |||||| || || || || || || || Sbjct 21619941 TTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 21620000 Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 || || || || |||||||||||||| || ||||| || ||||| ||| |||||||| Sbjct 21620001 TGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCA 21620060 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || |||| ||||||||| ||||| |||||||||||||| || ||||||||| Sbjct 21620061 CTTGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCATT 21620120 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || |||| || | ||| || |||||||| || || ||||| || || | Sbjct 21620119 TTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTG 21620178 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | |||||||| | |||||| || || || || || || || || || || | Sbjct 21620179 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 21620238 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||||||||| || ||||| || ||||| ||| |||||||| || || | Sbjct 21620239 GGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGA 21620298 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||| ||||||||| ||||| || ||||||||||| || |||||||| ||| Sbjct 21620299 CCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCATGATG 21620351 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | || |||| || | ||| || |||||||| || || ||||| || || | Sbjct 37620304 TTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTG 37620363 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | |||||||| | |||||| || || || || || || || || || || | Sbjct 37620364 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 37620423 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||||||||| || ||||| || ||||| ||| |||||||| || || | Sbjct 37620424 GGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGA 37620483 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| ||||||||| || || |||||||||||||| || |||||||| Sbjct 37620484 CCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | ||| || | ||| |||| || | ||| || |||||||| || |||||||| Sbjct 37619872 TTTTACTGTCCGCCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTG 37619931 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || ||||| || | |||||||| | ||| || || || || || || || || ||| Sbjct 37619932 TAGTCTGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGG 37619991 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 || || || |||||||||||||| || ||||| || || Sbjct 37619992 TCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTT 37620029 >seq4 Length=75030901 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| ||||| ||| |||||||||| || ||||| Sbjct 61466952 CATGACGCCCATCCTCTGGTACTCACCGACCCGCTTCTCAAAGAAGTTGGTTTTTCCCTC 61466893 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| |||||||||||||||||||||||| Sbjct 61466892 CAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTCTC 61466857 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| ||||| ||| |||||||||| || ||||| Sbjct 61474970 CATGACGCCCATCCTCTGGTACTCACCGACCCGCTTCTCAAAGAAGTTGGTTTTTCCCTC 61475029 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| |||||||||||||||||||||||| Sbjct 61475030 CAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTCTC 61475065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921554464908840