Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 331 2e-85 seq4 123 5e-23 seq11 113 9e-20 seq19 105 1e-17 >seq6 Length=67274854 Score = 331 bits (366), Expect = 2e-85 Identities = 904/1370 (66%), Gaps = 46/1370 (3%) Strand=Plus/Plus Query 244078 GACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTT 244137 || |||||| || || | ||| |||||||| || || || | ||| ||||| ||| Sbjct 22087195 GAGCAGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTT 22087254 Query 244138 GCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGG 244197 |||| || | |||||| ||| |||| ||||| ||||| || ||| ||| || || Sbjct 22087255 GCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGG 22087314 Query 244198 CATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTC 244257 ||| || | | |||||| || || |||||||| || | ||| | | ||| Sbjct 22087315 CATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAG 22087374 Query 244258 GTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAG 244317 ||||||||||||| | | | ||| ||| | | |||||||||| | ||||| Sbjct 22087375 CTTCCAGTCCCACAGGTCTGT-AGG------CGTCTT--GTCCCACATGTCGTATTGCAG 22087425 Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG---TCGCGCTGGGC 244374 | ||||||||||| ||| || ||||||||| ||| || ||| ||| || | | Sbjct 22087426 GATGCCCTTGCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCG-GCAG--C 22087482 Query 244375 CAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCAT 244434 |||| |||||| | || || || ||||||||||||||||| || ||| |||| | Sbjct 22087483 TAGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAG 22087542 Query 244435 GTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCC 244494 | |||| || |||||| | ||||| |||||| | || |||| || Sbjct 22087543 CAACTGAGCCTCTGGGCTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACC 22087602 Query 244495 CTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGG 244554 || || || || || || || ||||| ||||||||||| | ||||| || || || Sbjct 22087603 TTGAACTCCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGG 22087662 Query 244555 GTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGGACGACGTCGG 244613 ||| ||||| || || |||||||||||||| | || | | || | || | Sbjct 22087663 GTAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTC-ACAGATG 22087721 Query 244614 CCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGT 244673 ||||| || ||||| | || || | ||||| | || || || Sbjct 22087722 CCAGCTTCTTGAAGTCAAA-----AG------TCCGTTCTGGTG----TGACGTACATGT 22087766 Query 244674 TGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAA 244733 |||| || | | ||| ||||| || || |||||||| || | ||||||||| |||| Sbjct 22087767 TGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAA 22087826 Query 244734 TCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGT 244793 |||||||| ||||| ||||| |||||||||||||| | ||| || || ||| || Sbjct 22087827 CTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGT 22087886 Query 244794 TGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGC 244853 | || || || ||||| |||||| | ||| || || || ||||| | | | | Sbjct 22087887 TACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGG 22087946 Query 244854 TGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGG 244913 | |||||| | | |||||| ||| | || | ||||| || || | Sbjct 22087947 CATACCAGAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCGTTTTCATATTTAG 22088006 Query 244914 TGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG- 244972 ||||||| || ||||| |||||| |||||| || || || ||| || ||| Sbjct 22088007 TGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACAC-TCGTTGGGA 22088065 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 ||||| || ||| | | || || |||| |||||| || || || ||||| Sbjct 22088066 CACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCAC 22088125 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 ||||| | ||||||||| |||| |||||||| ||| || ||||||||| |||||||| Sbjct 22088126 AGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCC 22088185 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | |||||||| || || | |||||| ||||||| ||| | || | ||| || || | Sbjct 22088186 AGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTT 22088245 Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGG 245208 ||||| || ||||| | || | | ||||| |||| | | | || | || Sbjct 22088246 TTGTTCCCCCCCTG----ATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGG 22088301 Query 245209 CACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC--TTGCCCCTGAGG 245266 ||| | ||||| |||| || ||||| || |||||| || ||| ||| |||| Sbjct 22088302 CACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTA-GCTCCCGGTTG-ATCTGATA 22088359 Query 245267 TTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATG 245326 ||||| | || ||| | || |||||| ||||| |||||||| || ||| | Sbjct 22088360 CAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAGA 22088419 Query 245327 GTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGC 245386 ||||| ||||| || |||||||| |||||| ||| || |||||| ||||||| Sbjct 22088420 GTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGC 22088479 Query 245387 TGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 || ||| | | | | | |||||| || || || ||||||||| || Sbjct 22088480 TGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAA 22088529 >seq4 Length=75030901 Score = 123 bits (136), Expect = 5e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | ||||| ||||| ||||||||||| || ||||||| |||||||||| Sbjct 61466023 TGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTCGCTTCCATCTTCT 61466082 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || ||||||||| || |||||| ||||| ||||||||||| | Sbjct 61466083 GGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAG 61466142 Query 42826 ACGAGG 42831 |||||| Sbjct 61466143 ACGAGG 61466148 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | ||||| ||||| ||||||||||| || |||| || ||||||||| Sbjct 61475899 TGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTTGCTGCCATCTTCT 61475840 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || ||||||||| || |||||| ||||| ||||||||||| | Sbjct 61475839 GGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAG 61475780 Query 42826 ACGAGG 42831 |||||| Sbjct 61475779 ACGAGG 61475774 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| || |||||||| || |||||||| Sbjct 61466862 CCCCTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAAACCAACTTCTTTGAGAAGCG 61466921 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 61466922 GGTCGGTGAGTACCAG 61466937 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| || |||||||| || |||||||| Sbjct 61475060 CCCCTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAAACCAACTTCTTTGAGAAGCG 61475001 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 61475000 GGTCGGTGAGTACCAG 61474985 >seq11 Length=48234189 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||| || || || || | ||| ||||| ||||||| || || ||||||| Sbjct 16879715 ACCTGAAACTCCCCGGAGAGAACCCTGCGAGTGTAGATGTTGCTGGTGTACGCCTCGATG 16879656 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || ||||| |||| || |||||| Sbjct 16879655 GACTCATTGTTGCCCAGAATCTGAGCGGTGGAGGCTGTGGGCATCGGCGCCATGAGCAGA 16879596 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 16879595 CTGTTCCTCACTCCGTGCCT 16879576 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| |||||||| |||||||| || || ||| || || |||| || |||||| || Sbjct 16878320 CATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGATCTCTGGCCCGCTGCTCCTCTTT 16878261 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||| ||||||||| |||| |||||||||||||| ||||| ||||| ||||||| ||| Sbjct 16878260 GCCCGTGTTCTTCTTCAGTTCCAAAAAGTCAAACACGTCTGAATGCCACGGCTCCAGGTA 16878201 Query 245131 GACAGCGAGGGCGCCGGG 245148 ||||| | || ||||| Sbjct 16878200 CACAGCAAACGCCCCGGG 16878183 Score = 105 bits (116), Expect = 1e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| ||| ||||||| || ||||| ||||| || || ||| | || |||||| Sbjct 16878789 ACCTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTG 16878730 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| || ||| ||| ||||||||||||||||||||||||| | ||| Sbjct 16878729 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTT 16878670 Query 244826 CCGGTCTC 244833 ||||| || Sbjct 16878669 CCGGTTTC 16878662 >seq19 Length=25483538 Score = 105 bits (116), Expect = 1e-17 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| |||| || || ||| | || || |||||| |||||||||||||| | || || Sbjct 15262110 GGAGAGCGGCTTGTGGCTTTTGCAGCTGTGGAGGGCGTCTTCTTCTCGGGCTCGTTTGCT 15262051 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||||| ||| ||| || ||| |||||| || |||||| ||| ||||| || Sbjct 15262050 GCCATCTACTGGCTGAAGAAGAGGG-GTCTGATGCCTGGCCTCACCCACTCCAACGAGCT 15261992 Query 42815 CATCAGCAGGGACGA 42829 ||||||||||| || Sbjct 15261991 GATCAGCAGGGATGA 15261977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944269590396720