Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 >seq8 Length=57680405 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 20527 GTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCT 20586 |||| | || |||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 19730747 GTACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATCCCCCTCCTC 19730688 Query 20587 TCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 ||||| || | ||| | | |||| || ||| ||| || || ||||| ||| | Sbjct 19730687 TCTGTCCGTGAAGCCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATCCCAAATCCT 19730628 Query 20647 GACTCCTGTTCTTGAAAGCTCCCTGG 20672 || ||| | ||| |||||| ||| Sbjct 19730627 CACACCTTTGTCTGACAGCTCCTTGG 19730602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || |||| ||||| | ||| || || | || | ||||||||| ||||| || || Sbjct 19731634 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGC 19731575 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || | |||||| || |||| | ||| |||||||||||||| ||||| || ||| Sbjct 19731574 ACCCCAAGACCCATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACAG 19731515 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || || || || || | ||| || || || || ||||| Sbjct 19731514 ACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCAT 19731474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441340265307480