Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5758 84.2 2e-11 seq5 82.4 6e-11 seq2 82.4 6e-11 >seq5758 Length=5239 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| | | |||| ||||||| Sbjct 1578 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGGAAC 1637 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 1638 CATAACTGATTTAATGAGCCATTCG 1662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| | | |||| ||||||| Sbjct 1578 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGGAAC 1637 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 1638 CATAACTGATTTAATGAGCCATTCG 1662 >seq5 Length=70255127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| | | |||| ||||||| Sbjct 65623871 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGGAAC 65623812 Query 115588 CAAAACTGATATATTGAGCCATTC 115611 || ||||||| || |||||||||| Sbjct 65623811 CATAACTGATTTAATGAGCCATTC 65623788 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| | | |||| ||||||| Sbjct 65623871 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGGAAC 65623812 Query 114391 CAAAACTGATATATTGAGCCATTC 114414 || ||||||| || |||||||||| Sbjct 65623811 CATAACTGATTTAATGAGCCATTC 65623788 >seq2 Length=88342039 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| | | |||| ||||||| Sbjct 18854932 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGGAAC 18854991 Query 114391 CAAAACTGATATATTGAGCCATTC 114414 || ||||||| || |||||||||| Sbjct 18854992 CATAACTGATTTAATGAGCCATTC 18855015 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| | | |||| ||||||| Sbjct 18854932 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGGAAC 18854991 Query 115588 CAAAACTGATATATTGAGCCATTC 115611 || ||||||| || |||||||||| Sbjct 18854992 CATAACTGATTTAATGAGCCATTC 18855015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397033863249394