Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 seq11 95.1 1e-14 seq4 93.3 5e-14 >seq6 Length=67274854 Score = 120 bits (132), Expect = 4e-22 Identities = 578/908 (64%), Gaps = 21/908 (2%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | || | | |||| |||||||||| ||| ||||||||||| Sbjct 22087247 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGAC 22087306 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 ||||||||||| || || | || ||||| || | | || | || || || Sbjct 22087307 GCTGTGGGCATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCT 22087366 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG---CCACATATCAAACTGG 114118 || || | |||||| | || | ||| | || |||||| || | || Sbjct 22087367 TTCAGCAGCTTCCAGTCCCAC---AGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGC 22087423 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 ||||| || | | | | || || || || | |||||||| || || | | || Sbjct 22087424 AGGATGCCCTTGCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCT 22087483 Query 114179 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 | ||| |||||||||| || || |||| || || ||||||||||| | || | Sbjct 22087484 AGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGC 22087543 Query 114239 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACC 114297 || ||||| | || || | || ||| || || || |||| || | ||| Sbjct 22087544 AACTGAGCCTCTGGGCTTTCGAAGG-GATAACGCATCAGGATGAAGGCATCTGCCAAACC 22087602 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 114357 ||| || || | || ||||| | || | | | || ||||| ||| || || Sbjct 22087603 TTGAACTCCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGG 22087662 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 || | || | || || ||| | || || |||||| | ||| || || | ||| Sbjct 22087663 GTAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAG-ATG 22087721 Query 114418 A-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 114476 ||||| | | | |||||| | || ||| |||| ||| | || || || | Sbjct 22087722 CCAGCTTCTTGAAGTCAAAAGTCCGT---TCTGGTGTGACGTACATGTTGAGAGCAATGG 22087778 Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536 | || || |||||||| | ||| || || |||||||| | || ||| || |||| Sbjct 22087779 AGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACA 22087838 Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || | || |||||||||| |||| || || ||| ||||||| ||||| | Sbjct 22087839 GGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTT 22087898 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CA 114655 |||| |||||||||||||| ||||| || || ||||||| | ||| || | ||||| | Sbjct 22087899 TGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCT 22087958 Query 114656 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCT 114715 | | | || || || || | | |||||| | || || || ||||| || | Sbjct 22087959 GCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTT 22088017 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 |||||||| || ||| | ||| ||||| || || | || || | || ||| Sbjct 22088018 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGAC 22088077 Query 114776 CA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAG 114832 || ||| || |||| || | ||||||||| || ||||| ||||| || || || Sbjct 22088078 CAGTTTTGGTTACTCTCC---ACTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAG 22088134 Query 114833 AAGAGATC 114840 ||||| || Sbjct 22088135 AAGAGGTC 22088142 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 115070 ccAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 ||||| || || || | || || || | || |||| | | ||| || | || || || Sbjct 22088375 CCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCT 22088434 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCC--TTGGTG 115187 ||||| ||| | || | |||| ||||||||||| |||| ||||||| ||| | Sbjct 22088435 TCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTTG--G 22088492 Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 | || ||||||||||||||||||| |||||| ||||| Sbjct 22088493 TTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAAC 22088530 >seq11 Length=48234189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 ||||||||| | |||||||||| || || || |||| ||| || | | |||||||| Sbjct 16878787 CTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATT--TAATGGTG 16878730 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| ||||| || || ||| |||| || || |||||||| |||||||| ||||| Sbjct 16878729 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTT 16878670 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651 || || || || || |||| || ||||| | ||| Sbjct 16878669 CCGGTTTCTGTCTGCGACTCGATGATAGCGTACCA 16878635 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||||||||| |||| || || ||||||||| Sbjct 16879682 TAGATGTTGCTGGTGTACGCCTCGATGGACTCATTGTTGCCCAGAATCTGAGCGGTGGAG 16879623 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||||||| || ||||| Sbjct 16879622 GCTGTGGGCATCGGCGCCATGAGCAGACTGTT 16879591 >seq4 Length=75030901 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || |||| ||||| Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||| || ||| ||| ||||| |||||||||||||||||||| Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCAC 61475882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || |||| ||||| Sbjct 61466148 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61466089 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||| || | | || ||||| |||||||||||||||||||| Sbjct 61466088 TCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATTCCCTCCAC 61466040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597309567572760