Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 >seq11 Length=48234189 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| |||| || |||||| | ||||||||||||||||| Sbjct 21619923 GTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 21619982 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| || || || || ||||| || || || | | || ||||| Sbjct 21619983 GCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGA-TCTTAGCTTT 21620041 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| | || || || | || | |||||| || || | || Sbjct 21620042 GACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGT 21620101 Query 64426 TTTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 21620102 CTTGACAAAGATCTGCATT 21620120 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| |||| || |||||| | ||||||||||||||||| Sbjct 21620151 GTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 21620210 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| || || || || ||||| || || || | | || ||||| Sbjct 21620211 GCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGA-TCTTAGCTTT 21620269 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| | || || || | || | |||||| || || | || Sbjct 21620270 GACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCAGTAAGGGT 21620329 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 21620330 CTTGACAAAGATCTGCAT 21620347 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| |||| || |||||| | ||||||||||||||||| Sbjct 37620336 GTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 37620395 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| || || || || ||||| || || || | | || ||||| Sbjct 37620396 GCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGA-TCTTAGCTTT 37620454 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| | || || || | || | |||||| || || | || Sbjct 37620455 GACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGT 37620514 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 37620515 CTTGACAAAGATCTGCAT 37620532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499607969932680