Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6 141 9e-29 >seq6 Length=67274854 Score = 141 bits (156), Expect = 9e-29 Identities = 594/932 (64%), Gaps = 22/932 (2%) Strand=Plus/Minus Query 93717 TTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAG 93776 |||| | | ||| | ||||||||| |||||| || || || || ||||| |||| | Sbjct 22088695 TTACAACTTCTTCGGCTTCAAAACCCTGGAGCGCTCCTATCTGCTGAAGATCAATGGAAA 22088636 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 || ||||||| ||||| || |||| ||| | || | | ||||| || | || Sbjct 22088635 AGTGGCCGAGCGTCCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATCCATGAGAGAGA 22088576 Query 93837 CATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGG---GACAAGAGGTATACC 93888 ||| ||| ||| | | || ||| || ||| | || ||| ||| ||| Sbjct 22088575 CAT--CGA------TGCAGCCATTGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACC 22088524 Query 93889 ATGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTT 93946 ||| | || ||||| |||||||| || ||| |||| |||||| |||| || | Sbjct 22088523 CACGCCTCACCAACCCTCTTCAACGCAGGAACCAACCGG--CCACAGCTGTCCAGCTGCT 22088466 Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 |||| | | | || | |||| |||| || |||| |||| || ||| | |||| Sbjct 22088465 TCCTCCTCGCCATGAAAGACGACAGCATCGAAGGCATTTATGACACTCTTAAGCAGTGTG 22088406 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066 | ||| || |||| ||| || || || || | ||| | | | | | | Sbjct 22088405 CCCTCATTTCCAAATCCGCCGGAGGCATTGGCGTGGCGGTCAGCTGTATCAGATCAACCG 22088346 Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126 | ||||||| ||||||||||| | ||||||||| || || || ||| | | || | Sbjct 22088345 GGAGCTACATCGCTGGTACCAATGGTAACTCCAACGGGCTGGTGCCCATGTTGAGAGTTT 22088286 Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186 |||||| | || ||||| || || ||||| || | || || | || || Sbjct 22088285 ACAACAATACTGCTCGCTATGTTGATCAGGGGGGGAACAAAAGACCTGGAGCCTTTGCCA 22088226 Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246 | || || ||||| |||||| || ||| | ||| | || ||| |||||| | Sbjct 22088225 TGTACCTGGAGCCATGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAG 22088166 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 | || || | |||| ||||||||||||||||| || || ||| | ||||| || || | Sbjct 22088165 GAAAGGAGGAGCAGAGAGCCAGAGACCTCTTCTATGCCCTGTGGATTCCAGATCTGTTCA 22088106 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 |||| | || |||| ||| |||| || | |||||||| || ||||| || | Sbjct 22088105 TGAAGAGAGTGGAGAGTAACCAAAACTGGTCCCTAATGTGTCCCAACGAGTGTCCTGGGC 22088046 Query 94367 TGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCA 94426 || ||| || || | |||||| | |||| || || ||| |||| | Sbjct 22088045 TGGACGAGTGCTGGGGGGAGGAGTTTGAAAAACTGTACACTAAATATGAAAACGAGGGGA 22087986 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | | || || | ||| | |||| ||| || || | || ||| | Sbjct 22087985 GGGTGAAGCGTGTGGTGAAGGCTCAGCAGCTCTGGTATGCCATTATTGAGTCCCAGACAG 22087926 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAG 94545 | ||||| ||||| ||||| ||| ||| || | ||| ||| ||| ||||||||| Sbjct 22087925 AAACGGGAACGCCATACATGCTGTACAAAGATGCATGT-AACAGGAAGAGTAACCAGCAG 22087867 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 | || || ||||| || || ||||||||||| |||| ||||| || Sbjct 22087866 AATCTGGGCACCATCAAATGCAGCAACCTGTGCACCGAAGTTGTTGAGTACACCAGCAAA 22087807 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 |||||| | || ||||||||||| | |||||| Sbjct 22087806 GACGAGGTGGCGGTGTGTAACCTTGCCTCCAT 22087775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 ||||| || |||| ||| ||||| | ||||| |||||||| || ||||| || ||| Sbjct 22087353 AAACATGGCGTGAGAAATAGCCTGCTGCTCGCCCCGATGCCCACAGCGTCCACCGCCCAG 22087294 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||||| || ||||||||||| ||||| ||| |||| |||| | |||| | |||| Sbjct 22087293 ATCCTGGGTAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACTCGCAGGGTC 22087234 Query 95194 CTCGCCGGGGAATTCC 95209 ||| | || || |||| Sbjct 22087233 CTCTCTGGAGAGTTCC 22087218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494686732716120