Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 122 9e-23 seq11 89.7 5e-13 >seq6 Length=67274854 Score = 122 bits (134), Expect = 9e-23 Identities = 619/976 (63%), Gaps = 37/976 (4%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 ||||| || || || ||||| || ||| ||| || | | |||||| || | ||| Sbjct 22087772 GCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCG 22087831 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | ||| |||||||||||||| ||| ||||| ||| ||||| || || || | || || Sbjct 22087832 GTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACAT 22087891 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773 || |||||| | |||||||| || || || || || | || | || | || Sbjct 22087892 GCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATAC 22087951 Query 153774 CTATGCAGGTCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGC 153830 | || | ||| || || ||| |||| | | |||||| | || ||| Sbjct 22087952 C---AGAGCTGCTGAGCCTTCACCACACGCTTC---ACCCTCCCCTCGTTTTCATATTTA 22088005 Query 153831 TCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGA 153890 ||||||| |||||||| || || |||| ||| | || || ||||||| | ||| Sbjct 22088006 GTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGA 22088065 Query 153891 CACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAG 153950 ||||| || ||||| | | || | || | |||||||||||| || | ||| Sbjct 22088066 CACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCAC 22088125 Query 153951 AGCGCGTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008 || || || | |||||| | || | ||| |||||| || |||| ||||| | Sbjct 22088126 AGGGCATAGAAGAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCT 22088183 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TT 154065 || | | | | | || |||||| || || | ||| | ||| | ||| || | Sbjct 22088184 CCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTC 22088243 Query 154066 TACGCTTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 | || || |||||||| || | ||| | |||||||| | || | || |||||| Sbjct 22088244 TTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGGCA 22088303 Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGAT 154185 |||| ||| | | | | || ||||| | ||| | ||| ||| | | |||| Sbjct 22088304 CCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCG-----GTTGATCTGAT 22088358 Query 154186 GCACGTTA-----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAG 154240 || | | ||||||||||| ||| || | || || ||| || || | || Sbjct 22088359 ACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAG 22088418 Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACAT 154300 || || ||||| |||||||| ||||| | | |||| | ||| || ||| Sbjct 22088419 AGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAG 22088478 Query 154301 TTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTG 154360 || || | ||||| || |||||||| || ||||| || ||| || | Sbjct 22088479 CTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAACCACTTCTC 22088538 Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGC-CGTGAATGCCGAGCG 154419 || || | |||||| || ||||| | ||||| || || | | || || || | | Sbjct 22088539 TGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTC-TCTCTCATGGATCCCAACAG 22088597 Query 154420 CGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC---TCTATTGTCAATCTTCAAGA 154476 || | ||||||||||||||||||||| ||||| || || |||| ||||||| | Sbjct 22088598 ACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATTG---ATCTTCAGCA 22088654 Query 154477 GATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAG 154536 |||| || ||||||||| | ||||| | ||||| |||||| || | | Sbjct 22088655 GATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATCTCTGTCGTAAA 22088714 Query 154537 CGATGGCCGCATCGAG 154552 ||||||| || ||| Sbjct 22088715 TTATGGCCGAATTGAG 22088730 >seq11 Length=48234189 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||||| || | || | | | |||||||| || ||||||||||| Sbjct 37620533 GCCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 37620592 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || ||||| || | | |||| || | ||| ||||| ||||| Sbjct 37620593 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 37620652 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | | || | |||||| | | ||| || Sbjct 37620653 GATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAAC 37620712 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || |||||||| || || || ||||| ||||||||| Sbjct 37620713 CTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATG 37620761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| || ||||| | ||| || |||||| |||| ||| ||||| || ||||| | Sbjct 16878773 TGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGGT 16878714 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 153759 |||| || | ||||| ||||| ||| ||||||||||||| ||||| || |||| Sbjct 16878713 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCCGGTTTCTGTCTGCG 16878654 Query 153760 TTTCGACGATA 153770 |||| |||| Sbjct 16878653 ACTCGATGATA 16878643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496225819257840