Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq11 84.2 2e-11 >seq6 Length=67274854 Score = 131 bits (144), Expect = 2e-25 Identities = 450/684 (66%), Gaps = 36/684 (5%) Strand=Plus/Plus Query 146109 GTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGT 146168 |||||||||| | | |||| |||||||||||||| || ||||| || || | || || Sbjct 22087252 GTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGT 22087311 Query 146169 AGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTC---CCG 146225 ||||| || | ||||| ||||||||||| ||| | ||||| || | | Sbjct 22087312 GGGCATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAG 22087371 Query 146226 TAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGT---AGTTGTCGTAATG 146282 || || ||| | ||||| | || || || | |||| | ||||||| || Sbjct 22087372 CAGCTT---CCAGTCCCACA---GGTCTGTAGGCG---TCTTGTCCCACATGTCGTATTG 22087422 Query 146283 CATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT 146339 || |||| || || |||||| ||| ||| | || || || ||| | || Sbjct 22087423 CAGGATGCCCTTGCTGA-CAGGGGAACCTTC--GTAGGTCTCGTACGGTCCG---AACTC 22087476 Query 146340 GGCC---AGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA 146396 ||| || |||||||| || |||||||| | |||| |||||||| ||| | Sbjct 22087477 GGCAGCTAGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGAT 22087536 Query 146397 GTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCG 146454 ||| | || ||| ||||| ||| ||| |||| ||| || | || | ||||| || Sbjct 22087537 GTTTA-GCAACTGAGCCTCTGGGCTTTCGAAGGG-ATAACGCATCAGGATGAAGGCATCT 22087594 Query 146455 GCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCC 146514 || | ||| || | || | || | || | ||| |||||| ||| |||| | Sbjct 22087595 GCCAAACCTTGAACTCCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCA 22087654 Query 146515 GCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTC 146574 | | || |||| |||| | || |||| ||||||||| || || | || ||| ||| Sbjct 22087655 GGAACTGGGTAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTC 22087714 Query 146575 AAACGATTC-AGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGAC 146633 | | ||| | ||| ||||||| || ||| | || |||| || |||||| Sbjct 22087715 ACA-GATGCCAGCTTCTTGAAGTCAAAAGTCC--GTTCTGGTGT-GACGTACATGTTGAG 22087770 Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTC 146693 || || ||||| | |||||| || || |||||| ||| | |||| |||| || Sbjct 22087771 AGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTC 22087830 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCA 146753 || ||| ||||||||||| |||||| |||||| ||| | |||||||| | |||| || Sbjct 22087831 GGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACA 22087890 Query 146754 GGGGTCCTTGTAGAGCATGTACGG 146777 | || ||||| |||||||| || Sbjct 22087891 TGCATCTTTGTACAGCATGTATGG 22087914 >seq11 Length=48234189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 ||| ||||||| |||| || ||||| | ||| || |||||| | || ||| |||| Sbjct 16878787 CTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCC 16878728 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||||| ||||||||||||||||||||| || Sbjct 16878727 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCC 16878668 Query 146784 GGTTTC 146789 |||||| Sbjct 16878667 GGTTTC 16878662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 146071 ACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA---TACACGTTGCTGGTGAACGGCTCG 146127 ||||||||||| |||| |||||| ||| || || | |||||||||| ||| |||| Sbjct 16879715 ACCTGAAACTCCCCGGAGAGAAC---CCTGCGAGTGTAGATGTTGCTGGTGTACGCCTCG 16879659 Query 146128 AACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGC 146187 | ||||| ||||| || || ||||| || || | || || ||||| ||||| ||| Sbjct 16879658 ATGGACTCATTGTTGCCCAGAATCTGAGCGGTGGAGGCTGTGGGCATCGGCGCCATGAGC 16879599 Query 146188 AAAGAGTTTCTCACGCCGTGTCT 146210 | | ||| ||||| ||||| || Sbjct 16879598 AGACTGTTCCTCACTCCGTGCCT 16879576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475465749647280