Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq17 141 1e-28 seq11 109 8e-19 >seq17 Length=38284538 Score = 141 bits (156), Expect = 1e-28 Identities = 197/276 (71%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 8900 CCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCT 8959 |||| ||||||| || | ||| ||| | || ||| | || |||||||| || || Sbjct 12839084 CCCTGCACATTGTTGCAGACGAGCTTCTGCAGGGAGGCGCTGTTGACGATGTCGAAGCCC 12839025 Query 8960 ACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATG 9019 ||| || || ||||||||||| ||||||||| |||||||||||||| ||| |||| Sbjct 12839024 ACGCTGCCTCCAAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTCCCCATC 12838965 Query 9020 AGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCG 9079 || ||||| | || || ||||| |||| ||| | || |||| ||||||||||| | Sbjct 12838964 AGGCCTTTGAGTGAGAAAGGAGCGCCCATCTCCACCATCGTCTCCCCGAAGATGGCGTTG 12838905 Query 9080 GGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAG 9139 || || ||||| || || | | |||| |||||| || || || || || || || || Sbjct 12838904 GGTCGGGGTTTCTCCACCAGCAGACCAGGGTAGAGCTCCACGGCATCTACATCACCGTAC 12838845 Query 9140 AGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | | |||| | |||||| || || || || ||| Sbjct 12838844 ATCTCCTCCAGCAAGGCAGCCATTTCTTTTTCGCCT 12838809 >seq11 Length=48234189 Score = 109 bits (120), Expect = 8e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 |||| ||||| | ||||| || ||| || || || ||||||||||| ||||||||| Sbjct 118316 GTTGACGTTTTGATGATGTTGAAGCCTGTCTCGCCTCCAAAGGTGCTGGGCTTCCAGTAC 118257 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | |||||| |||| ||| | | || ||||||||||| || ||||| |||| ||| Sbjct 118256 TCAGGGGAGTTGATGGGGTTTCCGAACAGGCCTTTCAAGGAGAAAGGAGCACCCATCTCC 118197 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | ||||||||||| || ||| |||||||| | ||| || | | || || | || Sbjct 118196 ACCATGCTCTCACCAAAAATGCAGCCGGGACGAGTTTTCTCCAGCAGGAGACCTGGATAA 118137 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTC 9165 | || | ||| || | ||| || ||||| | || || | ||||||| || Sbjct 118136 AACTCCAGAGCATCAATGTCTCCGTAGAGTTCCTCTAAACCTTCAGCTATTTC 118084 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 9718 CCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCG 9777 ||| | ||||| || | |||||||| |||| |||||| || |||| || ||||| Sbjct 116587 CCGATGATGATGAGTCTGGTGGTTTGGAACAGCTGCTCATCGTCCCACGTTGGATGTTC- 116529 Query 9778 TGT-TTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCAT 9836 ||| || || | |||||||| |||||||| || |||| ||| |||||||||||||| | Sbjct 116528 TGTCTTCAGGATGTCGCAGACTCTGTTGTGCTCCCTCAACCAGATGGTGGCGTACATGGT 116469 Query 9837 TAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA- 9895 | ||||||| | || ||||| || | || | || | ||| | |||||||| | Sbjct 116468 GAGGCCCGGCAGGAGGCCGAACACCTCCTGACCGATGGCCAGACGCTGCTCATCGGGGAA 116409 Query 9896 --CTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTC 9953 |||| || |||| ||| ||||| || ||| | | || || ||||| || Sbjct 116408 GCCTTCAGG---GTACACCATGTGCACAGGGACCTCAGAGGTTTTAGGAGGGTACATCTC 116352 Query 9954 ACCGTCAATAACCTGATA 9971 ||| || || ||||| || Sbjct 116351 ACCATCTATCACCTGTTA 116334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723674652199800