Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-19 seq11 95.1 1e-14 seq4 89.7 6e-13 >seq6 Length=67274854 Score = 111 bits (122), Expect = 2e-19 Identities = 497/772 (64%), Gaps = 23/772 (3%) Strand=Plus/Plus Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487 || || || || || || |||||||| | ||| || || |||||||| | || | Sbjct 22087769 AGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACT 22087828 Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547 || || |||| || | || |||||||||| |||| || || ||| ||||| Sbjct 22087829 TCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTA 22087888 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607 || ||||| ||||| ||||| |||||||| ||||| || || ||||||| | ||| || Sbjct 22087889 CATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCA 22087948 Query 116608 TTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 116666 | ||| | | | | | || || || || | | |||||| | || || || || Sbjct 22087949 TACCAGAGCTGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCGTTTTCATATTTAGT 22088007 Query 116667 GTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGAC 116725 ||| || |||||||| || ||| |||| ||| ||||| || || | |||| Sbjct 22088008 GTACAGTTTTTCAAACTCCTCCCCC-CAGCACTCGTCCAGCCCAGGACACTCGTTGGGAC 22088066 Query 116726 AGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | | || ||||| ||| || |||| || | ||||||||| || ||||| |||| Sbjct 22088067 ACATTAGGGACCAGTTTTGGTTACTCTCC---ACTCTCTTCATGAACAGATCTGGAATCC 22088123 Query 116783 AGAGCGCCGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 116841 | || || ||||||| || | | | ||| || | | || || || || | Sbjct 22088124 ACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGC 22088182 Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---- 116897 |||| ||||| | | ||| |||||| || |||||||||| || | | || Sbjct 22088183 TCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGT 22088242 Query 116898 CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGG 116957 ||| | || |||| | ||||| | || || ||| | || | | ||| || Sbjct 22088243 CTTTTGTTCCCCC-CCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGG 22088301 Query 116958 AATGATACCATCAGATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGACAT 117016 | | || | || | ||||| || || ||| | | |||| ||||| | Sbjct 22088302 CACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCGGTTGA-TCTGATAC 22088360 Query 117017 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGAC 117076 | || || ||||| || || || | || || || | || |||| | | ||| Sbjct 22088361 AGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAGAG 22088420 Query 117077 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 117136 || | || || || ||||| ||| | || | |||| |||||||||||| |||| | Sbjct 22088421 TGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGCT 22088480 Query 117137 GTGGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||||| ||| || || ||||||||||||||||||| |||||| ||||| Sbjct 22088481 GTGGCCGGTTG--GTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAAC 22088530 >seq11 Length=48234189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 ||||||||| | |||||||||| || || || |||| ||| || | | |||||||| Sbjct 16878787 CTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATT--TAATGGTG 16878730 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| ||||| || || ||| |||| || || |||||||||||||| || ||||| Sbjct 16878729 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTT 16878670 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 || || || || || |||| || ||||| | ||| Sbjct 16878669 CCGGTTTCTGTCTGCGACTCGATGATAGCGTACCA 16878635 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||||||||| |||| || || || |||||| Sbjct 16879682 TAGATGTTGCTGGTGTACGCCTCGATGGACTCATTGTTGCCCAGAATCTGAGCGGTGGAG 16879623 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||||||| || ||||| Sbjct 16879622 GCTGTGGGCATCGGCGCCATGAGCAGACTGTT 16879591 >seq4 Length=75030901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||| |||||| ||||| || |||| ||||| Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || ||| ||| || || ||||||||||| |||||||| Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCAC 61475882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613461976850520