Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 123 4e-23 seq11 96.9 6e-15 >seq6 Length=67274854 Score = 123 bits (136), Expect = 4e-23 Identities = 463/718 (64%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 204893 TCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTA 204952 |||||||||| ||| | ||| || | |||| || |||||||||| ||| | |||| Sbjct 22087829 TCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTA 22087888 Query 204953 CAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGAATGTGG 205012 || | || ||||||| |||| | ||| |||| | || |||| || | |||| Sbjct 22087889 CATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCA 22087948 Query 205013 GTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTT 205069 ||| | | |||||| |||| ||||||| | |||| | || ||||| Sbjct 22087949 TACCAGAGCTGCTGAGCCTTCACCACACGCTTCAC---CCTCCCCTCGTTTTCATATTTA 22088005 Query 205070 GTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGACATTTTTTG 205126 |||||||| |||| || || | || |||||| |||| ||||| | ||| Sbjct 22088006 GTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCAGGACACTCGTTG 22088062 Query 205127 GGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATC 205186 |||||||| || ||||| | || | | ||| |||| ||| ||||| || ||| Sbjct 22088063 GGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATC 22088122 Query 205187 CACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAG 205246 |||||| | || || || || | ||| || | || | ||| |||||| |||| Sbjct 22088123 CACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGC 22088182 Query 205247 TCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGG 205305 ||||| ||| | | | || |||||| ||||| | ||| ||| | || || || Sbjct 22088183 TCCAG-GAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGG 22088241 Query 205306 CCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGG 205365 || |||||||| ||||| || || ||||| | |||| |||||| || ||| || Sbjct 22088242 TCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGG 22088301 Query 205366 CACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTT 205425 |||||| ||||||| | | || || || | |||| || | || | Sbjct 22088302 CACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCGGTTGATCTGATACA 22088361 Query 205426 GGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGT 205485 | || ||| ||||||| || || | | |||| || |||| |||| | ||||| Sbjct 22088362 GCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAGAGT 22088421 Query 205486 GCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT- 205544 | || |||||| ||||| ||||| || | | || |||| | ||||| Sbjct 22088422 GTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGCTG 22088481 Query 205545 TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 |||| |||||| || |||| |||||| || || ||||||| |||| | |||||| Sbjct 22088482 TGGC-CGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAACCACTTCTC 22088538 >seq11 Length=48234189 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| || ||||| || |||| || ||| | | |||| ||||| | | | Sbjct 16879720 TGCTGACCTGAAACTCCCCGGAGAGAACCCTGCGAGTGTAGATGTTGCTGGTGTACGCCT 16879661 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 ||| | ||| |||||||| | ||||||||||||| ||| |||||||| || |||| || Sbjct 16879660 CGATGGACTCATTGTTGCCCAGAATCTGAGCGGTGGAGGCTGTGGGCATCGGCGCCATGA 16879601 Query 204309 GCAGGGAGTTGCGCACACCGT 204329 |||| ||| | ||| |||| Sbjct 16879600 GCAGACTGTTCCTCACTCCGT 16879580 Score = 93.3 bits (102), Expect = 7e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | |||||| | ||||||| ||| || || || ||||||||||| Sbjct 16880160 CCAGCCGTAGAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGTT 16880101 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 |||||||||||| ||||| ||| ||||||| || ||||| ||||| || | | ||| | Sbjct 16880100 CAGAGACTGGCTCTGGTCTATG-TAGGCGCCGCGGTCTGCTGCCATCTTCAGGACGGTTT 16880042 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || ||||| || || || Sbjct 16880041 TCTGAGAGATTTCCCAGACGGTTTT 16880017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795096587122320