Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq11 147 5e-30 >seq11 Length=48234189 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | ||||||||||||||| || |||||||| |||| ||||||||| | | || Sbjct 37620539 TCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGT 37620598 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||| || || || ||||| || | ||||||||| ||| || || Sbjct 37620599 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 37620658 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| |||||| |||| |||||| ||| || || |||| Sbjct 37620659 TTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAACCTCCAG 37620718 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| ||||| || || ||||| || || Sbjct 37620719 GGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTG 37620757 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| || | ||||||||| | | || | ||||| Sbjct 37620320 CAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATC 37620379 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| || || ||||| || | |||||| || || || ||||| || Sbjct 37620380 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 37620439 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| || || || | |||||| ||| || || |||| ||||| || Sbjct 37620440 CTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGT 37620499 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| ||||| || || ||||| || || Sbjct 37620500 CTTACCAGTGAGGGTCTTGACAAAGATCTG 37620529 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| || | ||||||||| | | || | ||||| Sbjct 21619907 CAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATC 21619966 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| || || ||||| || | |||||| || || || ||||| || Sbjct 21619967 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 21620026 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| || || || | |||||| ||| || || |||| ||||| || Sbjct 21620027 CTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGT 21620086 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || Sbjct 21620087 CTTTCCTGTGAGGGTCTTGACAAAGATCTG 21620116 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| || | ||||||||| | | || | ||||| Sbjct 21620135 CAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATC 21620194 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| || || ||||| || | |||||| || || || ||||| || Sbjct 21620195 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 21620254 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| || || || | |||||| ||| || || |||| ||||| || Sbjct 21620255 CTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGT 21620314 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || ||||| || || Sbjct 21620315 CTTTCCAGTAAGGGTCTTGACAAAGATCTG 21620344 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | ||||||||||||||| || |||||||| |||| ||||||||| | | || Sbjct 37619886 TCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGT 37619945 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||||| || || || ||||| || | ||||||||| ||| || || Sbjct 37619946 ACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 37620005 Query 199528 TTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| Sbjct 37620006 TTCCTTGTCCTGGATCTT 37620023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178832526210099