Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq11 105 8e-18 >seq11 Length=48234189 Score = 105 bits (116), Expect = 8e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| | || || ||||||||||| || || Sbjct 21619928 CTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 21619987 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | || ||||||||| |||||| |||| | Sbjct 21619988 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 21620047 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || |||| |||||||| || || || || || || || Sbjct 21620048 CTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGAC 21620107 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 21620108 AAAGATCTGCATT 21620120 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| | || || ||||||||||| || || Sbjct 21620156 CTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 21620215 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | || ||||||||| |||||| |||| | Sbjct 21620216 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 21620275 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || |||| |||||||| || || || || || || || Sbjct 21620276 CTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGAC 21620335 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 21620336 AAAGATCTGCAT 21620347 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || ||||| | || || ||||||||||| || || Sbjct 37620341 CTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 37620400 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | || ||||||||| |||||| |||| | Sbjct 37620401 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 37620460 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || |||| |||||||| || || || || || || || Sbjct 37620461 CTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGAC 37620520 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 37620521 AAAGATCTGCAT 37620532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565196734864440