Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11 125 7e-24 seq4 96.9 3e-15 >seq11 Length=48234189 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| || || ||||||||| | || || ||| | Sbjct 37620764 AAACATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCC 37620705 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | | | |||| | |||| || |||| ||||| || || || || | | Sbjct 37620704 AAGTGACACCATCGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTG 37620646 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || |||||||||||||| || | ||||||||| |||| Sbjct 37620645 ACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCAGACT 37620586 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || || || | || |||||| | ||||| ||| Sbjct 37620585 ACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTTAGAGGTGGC 37620533 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| || || ||||||||| | || |||||| | | Sbjct 21620120 AATGCAGATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGCCAAG 21620061 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | |||| || |||| ||||| || || || ||| | || || Sbjct 21620060 TGACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 21620001 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| ||||| || || | ||||||||| |||||||| Sbjct 21620000 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 21619941 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || || || | || |||||| |||| || || Sbjct 21619940 CATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 21619893 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || |||||| | | Sbjct 37620532 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCAAGT 37620473 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| ||||| || || || ||| | || || Sbjct 37620472 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 37620413 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 37620412 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 37620353 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || | || |||||| |||| || || Sbjct 37620352 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 37620306 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || |||||| | | Sbjct 21620347 ATGCAGATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTCGAGCCAAGT 21620288 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| ||||| || || || ||| | || || Sbjct 21620287 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 21620228 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 21620227 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 21620168 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || | || |||||| |||| || || Sbjct 21620167 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 21620121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| || |||| ||||| || || || || | ||||| ||| |||| || | || Sbjct 37620029 AAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCT 37619970 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 |||||||||||||| || | || |||||| |||||||||||||| ||||| | || Sbjct 37619969 GGCAAACAGCTGGAAGATGGCCGTACCCTCTCAGACTACAACATCCAGAAGGAGTCCACC 37619910 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || | || |||||| | |||||||| Sbjct 37619909 CTCCACCTTGTCCTGCGTCTTAGAGGCGG 37619881 >seq4 Length=75030901 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| |||||||| ||||| | || | Sbjct 61466148 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61466089 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| ||||| || || ||||||| ||||| ||||| || || | Sbjct 61466088 TCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61466029 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 61466028 CCACCACACGCTCTCC 61466013 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| |||||||| ||||| | || | Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||| || || || || ||||||| ||||| ||||| || || | Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGG 61475893 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 61475894 CCACCACACGCTCTCC 61475909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || || |||||||| ||||||||||| || || ||||||| |||||| |||| Sbjct 61476387 ACCAGGTTCTCATTGACGATACCGTCGCTGGCAGCAAAGAAGGCCAACACGTGGGAGATG 61476446 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 |||| ||||| | || |||| ||||||| || ||||||||||||||| ||| Sbjct 61476447 AAATATCGCTCATCATCCTTCAGAGATTCCCAGTGCTGCAGGTCCTTGGACAGGTCGACC 61476506 Query 133399 T 133399 | Sbjct 61476507 T 61476507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135931012480