Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq233 113 3e-19 seq11 104 2e-16 >seq233 Length=80912 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| || || || |||| ||||||||| || |||||||| || |||| || ||| Sbjct 71139 TTTTTATCCAGGCCGTATGCAATAGCAGCAGCTGTGGGTTCATTGATGATTCGCAGCACA 71080 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 |||||||||| ||| | || || ||||| || ||||| | || || || || || || Sbjct 71079 TTAAGACCAGAGATTGTCCCAGCGTCTTTGGTTGCTTGACGCTGAGAGTCATTGAAGTAA 71020 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || ||||| |||| Sbjct 71019 GCAGGAACTGTGATAACTGCAT 70998 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | |||||||| |||||| || || | || | ||||| |||||||||| || Sbjct 70522 CAAATACAGTATTGGCTGGATTCATGGCCACCTGGTTCTTGGCAGCATCTCCAAGGAGTC 70463 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 70462 TCTCAGTGTCTGTGAAGGCCACATAACTGGGTGTGGTCCTGTTTCCTTGGTCATTGGCAA 70403 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 |||| || ||||| |||| ||| | | || ||||| | | || || || ||||||| Sbjct 70402 TAATCTCCACTTTGCCATGTTGGAAGATTCCAACACAGGAATAGGTGGTACCCAAATCAA 70343 Query 518703 TACC 518706 |||| Sbjct 70342 TACC 70339 >seq11 Length=48234189 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| |||| |||||| |||||||||||||| || || | | |||| Sbjct 12755971 TTCTTGTCCAGCCCATAGGCAATAGCAGCTGCAGTTGGTTCATTGATGATACGGAGAACA 12756030 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | || |||||||| ||||| || | || || || ||||| || Sbjct 12756031 TTAAGGCCAGAGATTGTGCCAGCATCTTTTGTGGCCTGGCGCTGAGAGTCATTAAAGTAG 12756090 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || ||||| || || || |||| Sbjct 12756091 GCGGGAACTGTGATTACAGCAT 12756112 Score = 95.1 bits (104), Expect = 9e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | ||| |||||||| || || ||| | || | || |||||||||||||| || Sbjct 12756497 CAAACACAGTGTTGGTTGGGTTCATGGCAACCTGGTTCTTTGCTGCATCTCCAATTAGCC 12756556 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 |||| ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 12756557 TCTCTGAGTCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 12756616 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | ||||||||||| |||| ||| | ||||| ||||| Sbjct 12756617 TGATTTCAACTTTGCCATGTTGGAACACACCAACACA 12756653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780529771435282