Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4911 262 5e-65 seq6 185 1e-41 seq233 163 4e-35 seq15 114 2e-20 seq11 87.8 2e-12 >seq4911 Length=55064 Score = 262 bits (290), Expect = 5e-65 Identities = 1025/1598 (64%), Gaps = 39/1598 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || ||| |||| || || || || || ||||||||||| || || || ||||| Sbjct 42385 TCGTCCTCAGCTTTGTATTTGTCAGCGTCCTGGACCATCTTCTCGATCTCCTCTTTGCTC 42326 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || ||||| || || || || || ||||| | ||| |||| | ||| || | Sbjct 42325 AGTCGGCCCTTGTCGTTGGTGATGGTGATCTTGTTCTCTTTGCCCGTGCTCTTGTCCACC 42266 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || ||||| || || || ||||| | || || | || | || || || | Sbjct 42265 GCAGACACGTTCAATATGCCGTTGGCATCGATGTCAAAAGTGACCTCGATCTGAGGG--A 42208 Query 6749 CCCCTCGGTG--CGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 |||||||| | ||| ||| || || | | ||||| | || || | |||| ||| Sbjct 42207 CCCCTCGGGGAGCGGGTGGGATTCCAGACAGCTCAAACTTGCCCAGCAGGTTGTTGTCCT 42148 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTG 6866 | | | | | |||||||| ||||| | || ||| | || || || || Sbjct 42147 TGGTCATGGCTCTCTCACCTTCGTAGACCTGGATCAGGACCCCGGGCTGGTTGTCAGCAT 42088 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | ||| | || || || | ||| || || || || | || | | | Sbjct 42087 AAGTAGTGAACACCTGGGTTTGTTTGGCTGGGATGGTGGTGTTGCGTTTGATCAGGGACG 42028 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || ||| |||| || || |||||||||| |||||||| || | || Sbjct 42027 TCATCACTCCTCCGGCAGTCTCGATCCCCAGTGACAGAGGTGCCACGTCCAGCAGAAGCA 41968 Query 6987 GGTCTTGAACAGATTCGTTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGTCG 7040 |||| || || ||| || || || || | ||||||||| ||||| | | Sbjct 41967 GGTCCTGGAC------GTTGCCCGAGGTGTCGCCTGTGAGGATGGCGGCCTGGACGGCGG 41914 Query 7041 CCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAAT 7100 | ||||| || ||||||||||| ||||| || | || ||||| || |||||| || Sbjct 41913 CGCCGTAAGCCACCGCCTCATCTGGGTTGATGCTCTTGTTCAGCTCCCGACCGTTGAAGA 41854 Query 7101 AATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTT 7160 | ||| | | || ||||| || ||||||| || || || || |||| |||| | Sbjct 41853 AGTCCTGCAGGAGTTTCTGAATCTTGGGGATTCTGGTTGAGCCTCCCACCAGGACGACGT 41794 Query 7161 CATTCA-CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 | | | || || || || || || | ||| || | ||| || ||||| |||| Sbjct 41793 CGTGGATCTGTCCCTTG-TCCATTTTGGCGTCCTTCAGAGCTTTCTCCACAGGCTCCAAG 41735 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||| ||| ||||| |||||||| || || | ||| ||||| || ||| Sbjct 41734 GTCCCCCTGAACAGGTCGGAGCACAGCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTAG 41675 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| ||| || | | || || || || ||| | | || | | || || | Sbjct 41674 AAGTCAATGCCCTCAAACAGGGAGTCGATCTCGATGCTGGCCTGGGAGCTGGAGGACAGG 41615 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || | || || | |||||| || || || | | | | ||| | | |||| | Sbjct 41614 GTCCTTTTGGCCCTCTCACAAGCAGTGCGCAGCCTCCTCAAGGCTCTCTTGTTATGGCTG 41555 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| ||||| | || ||||| || ||||| | | | || Sbjct 41554 ATGTCCTTCTTGTGTTTCCTCTTGAACTCCTCCACAAAGTGGTTCACCATGCGGTTGTCA 41495 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || || |||| ||| || || || || || || || || |||||||| || | Sbjct 41494 AAGTCCTCTCCTCCCAGGTGAGTGTCACCGGCCGTGGCCTTCACCTCAAAGATGCCGTCA 41435 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || || || || || || |||||||| || || || || ||||| Sbjct 41434 TCAATGGTCAGGATGGACACGTCGAAGGTGCCTCCACCCAGATCGAAGATCAGGACGTT- 41376 Query 7580 GTATCGTCGTCTT----TG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 |||| || | || || || || || ||||| ||||| || || ||||| || Sbjct 41375 ---TCGTTCTCCTGACCTGCCTTTTTTGTCCAGTCCGTATGCGATGGCAGCTGCCGTGGG 41319 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTT 7691 || || || || | || ||| || || || || | |||| | ||||| || || | Sbjct 41318 CTCGTTGATGATCCTCAGGACGTTGAGTCCTGCGAT-GACGCCGGCGTCTTTAGTGGCCT 41260 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 |||| || || ||||| || |||||||||||||| | ||| || | | || || | | Sbjct 41259 GTCGCTGGGAGTCGTTGAAATAGGCCGGGACCGTGATGACAGCTTTGGACACCTTGTGGC 41200 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | || || | || || || || ||||| || || ||||| || |||||||| |||| Sbjct 41199 CCAGGTAGGCCTCAGCAATCTCCTTCATCTTCACCAGGACCATGGAGGAAATCTCCTCAG 41140 Query 7812 CCGCAAACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | | || | ||| || || || | || |||| ||| |||| || | | || Sbjct 41139 -GGGAGAAGGTCTTGTTCTCTCCTTTGTACTCCACTTGAATTTTGGGCTT---CCCTCCA 41084 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | | | ||||| | | ||| | ||||| ||| | || ||| | ||| |||| Sbjct 41083 TCTGAAACCACCTTGAAGGGCCAGTGCTTCATGTCGGCCTGCACCACTGAGTCATCAAAC 41024 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 ||||||| || || | ||| |||||||| || ||||| ||||||||| || ||| Sbjct 41023 CTTCTTCCAATCAGCCTCTTGGCATCAAACACAGTGTTGCTGGGGTTCAGAGCCACCTGG 40964 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || |||||||| || || | || | | || || || || || || ||| Sbjct 40963 TTCTTGGCTGCGTCCCCAATCAGCC--TC-TCTGTGTCAGTGAAGGCCACATAGCTGGGG 40907 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || || | || || |||||||| || || || || || ||| ||| | || || Sbjct 40906 GTGGTCCTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTTCCGTGTTGGAAAACCCCC 40847 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || || || || || | || || ||||| || Sbjct 40846 ACACAGGAGTAGGTGGTGCCCAGGTCGATGCCGATGGC 40809 >seq6 Length=67274854 Score = 185 bits (204), Expect = 1e-41 Identities = 370/543 (68%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || |||||||| || |||||||| |||||||| | || || || || || || || || Sbjct 12189112 GCGCCGTATGCCACGGCCTCATCAGGGTTAATGCTCTTGTTGAGCTCCTTCCCATTGAAG 12189053 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || ||||| || || || || || || ||||| || Sbjct 12189052 AAGTCCTGCAGCAGCTTCTGGATCTTAGGGATGCGGGTAGAACCTCCCACTAAAACAATG 12188993 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | | || || || |||| ||| || || | ||||| || ||||| | | Sbjct 12188992 TCGTGGATCTGAGCCTTGTCCATTTTTGCGTCACGGAGAGCCTTTTCCACGGGTTCAAGA 12188933 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | | |||| ||| || |||||||| || || | || ||||| || ||| Sbjct 12188932 GTTCCTCTAAACAGGTCAGCGTTAAGCTCCTCAAACCGCGCCCTAGTGATGGAGGTGTAG 12188873 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||||| ||||| ||||||| | | | || | |||| |||| Sbjct 12188872 AAGTCGATGCCCTCGTATAGGGAATCGATTTCAAGGCTGGCCTGGGTGCTCGAGGATAGG 12188813 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||||||||| || || | ||| || | || | | ||| || Sbjct 12188812 GTGCGCTTGGCTCGCTCACACGCTGTGCGCAGACGCCGCACTGCCCTCTTGTTGTCGCTG 12188753 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGT-GTCGA--AGGAGTCTCGA 7455 || |||||||| | || ||||| ||||| ||| ||||| || || | | | | Sbjct 12188752 ATGTCTTTCTTGTACTTGCGTTTGAACTC-CGAGATGAAGTGGTTGACCATGCGATT--- 12188697 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 || || ||||||||||||| |||||| || || || || || || || |||||||| || Sbjct 12188696 GTCAAAGTCTTCACCACCCAGGTGTGTGTCGCCAGCTGTGGCCTTCACCTCAAAGATGCC 12188637 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||||| | || | || || ||||| || || ||||| |||||||| ||||| || Sbjct 12188636 ATCCTCAATAGTCAAGATGGAGACGTCAAAGGTGCCGCCACCAAGGTCAAAGATGAGAAC 12188577 Query 7576 GTT 7578 ||| Sbjct 12188576 GTT 12188574 >seq233 Length=80912 Score = 163 bits (180), Expect = 4e-35 Identities = 363/542 (67%), Gaps = 6/542 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || |||||||| ||||| || | ||||| | || ||| || || Sbjct 71778 GCCCCATAAGCCACAGCCTCATCTGGGTTGATGCTCTTATTTAAATCACGACCATTGAAG 71719 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | ||| || || ||||| ||||| |||||||| |||| ||| || Sbjct 71718 AAGTCCTGCAGAAGCTTTTGGATCTTAGGGATACGTGTGGATCCACCTACCAGAACAATG 71659 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || || || | |||| || | ||| || || ||||| | Sbjct 71658 TCATGGATCTGGGACTTGTCCATTTTGGCATCTCTGAGAGCTTTCTCCACTGGTTCAAGC 71599 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||||| ||| | || || ||||| || || | ||| || || || ||| Sbjct 71598 GTTCCGCGGAACAGGTCTGCATTGAGCTCTTCAAAGCGAGCCCTGGTGATTGAGGTGTAG 71539 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCG-TCGAAGAT 7336 || || || || || | ||| |||||||||||| | | || ||| | |||| Sbjct 71538 AAGTCTGTACCTTCATAAAGCGAGTCAATTTCAATGCTGGCCTGGGTGCTGCTCGAG--- 71482 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || |||||||| ||||| ||||| || || | |||||| | || ||| || | | Sbjct 71481 AGGGTGCGCTTTGCACGCTCGCACGCAGTGCGCAGACGACGCACAGCTCGCTTATTGCTG 71422 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || || || || || || ||||| || |||||| || | | Sbjct 71421 ATGATGTCCTTTTTGAACTTGCGCTTGAACTCAGCAATGAAGTGATTAACCATGCGGTTG 71362 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || ||||||||||| ||||| || || || || || ||||| |||||||| || Sbjct 71361 TCAAAGTCCTCACCACCCAAATGTGTGTCGCCTGCTGTGGCCTTGACCTCAAAGATGCCA 71302 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | || |||||||| ||||||||||| || ||||||||||| || Sbjct 71301 TCCTCAATCGTGAGGATTGACACATCAAATGTACCACCACCAAGATCAAAAATGAGGACA 71242 Query 7577 TT 7578 || Sbjct 71241 TT 71240 >seq15 Length=41915801 Score = 114 bits (126), Expect = 2e-20 Identities = 392/605 (65%), Gaps = 7/605 (1%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || |||||||||| ||| | || | || || ||||| |||| ||| || | || ||| Sbjct 17957603 AGCTCCTCAAAACATGCTCTTGTGACTGAAGTGTAGAAGTCAATGCCTTCAAACAAAGAA 17957544 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || || |||||| | | || | | || || || || | ||| | | ||| || || Sbjct 17957543 TCGATCTCAATGCTAGGCTGAGAACTGGATGACAAGGTCCTCTTGGTTCTCTCGCAGGCT 17957484 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA--ATATCTTTCTTATGTTTACGTT 7421 || || | | | | || | | ||| | || ||||| ||||||||||| | || Sbjct 17957483 GTCCGGAGTCTCCTTACCGCTCTCTTGTT--CTGACTGATATCCTTCTTATGTTTCCTTT 17957426 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 ||||||||||| ||||| | | || || || || | || || | ||||| Sbjct 17957425 TAAACTCTTCAACAAAGTGGTTGACCATTCAGTTGTCAAAGTCCTTCCCGCCAAGGTGTG 17957366 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || ||||| |||||| | || || | |||||| | | | || |||| Sbjct 17957365 TGTCTCCTGCTGTTGCTTTTACTTCAGATATGCCATCCTCAATGGTCAGAATAGACACAT 17957306 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT-TGTTCTTA 7600 |||| || || |||| || |||| || || ||| | || || |||| ||| | | Sbjct 17957305 CAAAGGTGCCTTCACCAAGACCAAAGATAAGAGTGTTACTCTC-TCCTCTTCTGTGTTCA 17957247 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 || || | ||| ||||| || || || || || || || | || | ||| ||| || Sbjct 17957246 TCCAGGCTGTA-GCGATGGCTGCTGCTGTGGGCTCGTTGGTGATCCTCAGAATGTTTAGC 17957188 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 |||| || | ||||||| || ||||| | || || || || ||||| || || Sbjct 17957187 CCAGAGATCACCCCATCATCTTTGGTGGCTTGCCTCTGTGAGTCATTGAAGTACGCTGGC 17957128 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || | || | | | || ||| || || || | || || || ||||||||| Sbjct 17957127 ACTGTGATGATAACATTTGACACCCTCTGTCCCAGGTAGGCCTCAGCAATCTCTTTCATT 17957068 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAA 7840 || || ||||| || || ||||| |||| ||| ||| | ||||| ||| | Sbjct 17957067 TTAACCAGGACCATTGAAGAGATCTCCTCAGGACAGAACACCTTCATCTCACCTTTATAT 17957008 Query 7841 TCAAC 7845 ||||| Sbjct 17957007 TCAAC 17957003 >seq11 Length=48234189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || || || || || ||||| || || ||||||||||| || ||||| ||| Sbjct 12755971 TTCTTGTCCAGCCCATAGGCAATAGCAGCTGCAGTTGGTTCATTGATGATACGGAGAACA 12756030 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||| || || | |||||||| || || || || || || || ||||||||| Sbjct 12756031 TTAAGGCCAGAGATTGTGCCAGCATCTTTTGTGGCCTGGCGCTGAGAGTCATTAAAGTAG 12756090 Query 7715 GCCGGGACCGT 7725 || || || || Sbjct 12756091 GCGGGAACTGT 12756101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635085982773480