Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 176 6e-39 >seq6 Length=67274854 Score = 176 bits (194), Expect = 6e-39 Identities = 947/1490 (64%), Gaps = 40/1490 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| |||| | | || ||||||| | ||| || ||| | | Sbjct 22088622 CCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATCCATGAGAGAGACATCGATGCAGCC 22088563 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | |||| | || ||||| |||||| ||||||||||||| Sbjct 22088562 ATTGAGACGTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCACCAACCCTCTT 22088504 Query 111731 CAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||| || || ||| | || || ||||||| || ||||| | || | || || Sbjct 22088503 CAACGCAGGAAC--CAACCGGCCACAGCTGTCCAGCTGCTTCCTCCTCGCCATGAAAGAC 22088446 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | |||||||| | |||||| | | ||||||| || || || | || Sbjct 22088445 GACAGCATCGAAGGCATTTATGACACTCTTAAGCAGTGTGCCCTCATTTCCAAATCCGCC 22088386 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 || || || || || || | ||||| | | | | || ||||| Sbjct 22088385 GGAGGCATTGGCGTGGCGGTCAGCTGTATCAGATCAACCGGGAGCTACATCGCTGGTACC 22088326 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 |||||| | || | || | | || ||| | | || | ||| || || |||||| Sbjct 22088325 AATGGTAACTCCAACGGGCTGGTGCCCATGTTGAGAGTTTACAACAATACTGCTCGCTAT 22088266 Query 111969 GTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || | || | ||| | ||| ||| | | || | || || ||||||||||| Sbjct 22088265 GTTGATCAGGGGGGGAA-CAAAAGACCTGGAGCCTTTGCCATGTACCTGGAGCCATGGCA 22088207 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | ||| | | || ||||| ||| || ||| ||| | |||||| | | Sbjct 22088206 CTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGC 22088147 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 | | || ||||||| || || |||||||||||||| |||||||||||||| |||||| Sbjct 22088146 CAGAGACCTCTTCTATGCCCTGTGGATTCCAGATCTGTTCATGAAGAGAGT---GGAGAG 22088090 Query 112145 TGGC---AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200 | | || ||||| || | ||||| || || || || || ||| ||| | || Sbjct 22088089 TAACCAAAACTGGTCCCTAATGTGTCCCAACGAGTGTCCTGGGCTGGACGAGTGCTGGGG 22088030 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC-G 112259 | |||||||||||| || ||||| || || || | || | ||| || ||| | Sbjct 22088029 G-GAGGAGTTTGAAAAACTGTACACTAAATATGAAAACGAGGGGAGGGTGAA-GCGTGTG 22087972 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 ||| ||| | | ||| | || ||| | |||| || || || || || || ||| Sbjct 22087971 GTGAAGGCTCAGCAGCTCTGGTATGCCATTATTGAGTCCCAGACAGAAACGGGAACGCCA 22087912 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 || ||||| |||||||| || |||||| |||||||| || ||||| |||| ||| Sbjct 22087911 TACATGCTGTACAAAGATGCATGTAACAGGAAGAGTAACCAGCAGAATCTGGGCACCATC 22087852 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || | |||||| || || ||| | | || | || |||||| ||| ||| ||| Sbjct 22087851 AAATGCAGCAACCTGTGCACCGAAGTTGTTGAGTACACCAGCAAAGACGAGGTGGCGGTG 22087792 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 |||||||| || || || |||||| || ||| || ||||| | ||| ||||| Sbjct 22087791 TGTAACCTTGCCTCCATTGCTCTCAACATGTACGTCACACCAGA---ACGGACTTTTGAC 22087735 Query 112500 TATGAAAAACTCCACGAAGTTACGAAA---ACTGTCACAAAAAACCTAAACAGAGTTATT 112556 | | || || || || ||| | |||| |||||||| |||| || ||| Sbjct 22087734 TTCAAGAAGCTGGCATCTGTGACCAAAGTTATTGTC---AAAAACCTCAACAAGGTCATT 22087678 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 || | || | ||||| ||| ||| || || || | | | ||| | ||||| Sbjct 22087677 GAAATCAACTACTACCCAGTTCCTGAAGCTGAGAAGTCCAACAAGCGCCACAGGCCAATA 22087618 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 || | || || |||||| | || |||| ||||| || || | | || || | Sbjct 22087617 GGAATTGGAGTTCAAGGTTTGGCAGATGCCTTCATCCTGATGCGTTATCCCTTCGAAAGC 22087558 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 || || || | || | || |||||||| || || |||| ||||| ||| Sbjct 22087557 CCAGAGGCTCAGTTGCTAAACATCCAGATTTTTGAGACCATCTACTACGCTGCTCTGGAG 22087498 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 ||||| | ||| | || | | || || || || |||| || ||||| || | Sbjct 22087497 GCGAGCTGCGAGCTAGCTGCCGAGTTCGGACCGTACGAGACCTACGAAGGTTCCCCTG-- 22087440 Query 112797 TCA-CAAGGG-GTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAGCTTCACTACGA 112852 ||| |||||| | || |||| || ||||||| ||| | || | | | || Sbjct 22087439 TCAGCAAGGGCATCCTGCAATACGACATGTGGGACAAGACGCCTACAGAC--CTGTGGGA 22087382 Query 112853 CTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 || ||| ||| || || || ||| | | || | | || || || || | | Sbjct 22087381 CT-GGAAGCTGCTGAAAGAGAAGATCGCTAAACATGGCGTGAGAAATAGCCTGCTGCTCG 22087323 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| ||||| |||||||| || ||| ||||||| || || | | | ||| ||| Sbjct 22087322 CCCCGATGCCCACAGCGTCCACCGCCCAGATCCTGGGTAACAACGAGTCCATCGAAGCCT 22087263 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 |||| | |||||||| | || |||| | |||||||| |||||| || | Sbjct 22087262 ACACCAGCAACATCTACACTCGCAGGGTCCTCTCTGGAGAGTTCCAGATTGTTAATCCTC 22087203 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 | || | | ||||| | |||| || || ||| | |||| |||||| Sbjct 22087202 ACCTGCTCAAAGACCTGACGGAGAAGGGGCTGTGGAGCGAGGAGATGAAG 22087153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620696643525840