Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 seq18 93.3 5e-14 seq9 93.3 5e-14 seq2 93.3 5e-14 seq11 87.8 2e-12 >seq6 Length=67274854 Score = 105 bits (116), Expect = 8e-18 Identities = 378/583 (65%), Gaps = 15/583 (3%) Strand=Plus/Plus Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| || || ||||||||| || ||||| || ||||| | |||||||||| || Sbjct 22087755 TGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGG 22087814 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||| || | || ||| || |||| |||| | || ||| |||| |||| ||| | Sbjct 22087815 TGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGT 22087874 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | || ||| |||||||| || || ||||||||||| || || ||||| ||||| | Sbjct 22087875 TACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGG 22087934 Query 110450 ACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508 ||| | |||||| | ||| | | | | | | || || || | || || Sbjct 22087935 ACTCAATAATGGCATACCAGAGCTGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCG 22087993 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTT 110567 | || || || ||||||| | ||||| |||| || | ||| || || || Sbjct 22087994 TTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCAC-TCGTCCAGCCCAGG 22088052 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTT---CCACCCTCCTCAACCCTCTTCATGAA 110624 || || |||||| | |||||||| ||| || |||| || ||||||||||| Sbjct 22088053 ACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCC---ACTCTCTTCATGAA 22088109 Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684 ||| || |||||||||| || |||| ||||| | | | ||| || | ||| Sbjct 22088110 CAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGT 22088169 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 ||| ||||||| ||||| | | ||| |||||||||| || || || | || Sbjct 22088170 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGC 22088229 Query 110745 GATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 | || ||| ||| | ||| |||| | ||||||||| || || ||| | | Sbjct 22088230 AAAGGCTCCAGGTCTTTTG-TTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAA 22088288 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACC 110843 | || | ||| || | | || | ||| | |||||| ||||| Sbjct 22088289 CTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACC 22088331 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 50831474 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 50831532 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||| Sbjct 67272073 TAGTTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCGATCCCC 67272017 >seq18 Length=37194005 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 17839437 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 17839495 >seq9 Length=57367160 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 37048406 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 37048348 >seq2 Length=88342039 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 85740521 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 85740579 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 87735828 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 87735886 >seq11 Length=48234189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| | |||| ||||||||||||| || || || || ||||| Sbjct 16879683 GTAGATGTTGCTGGTGTACGCCTCGATGGACTCATTGTTGCCCAGAATCTGAGCGGTGGA 16879624 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||||||||| || |||||||| |||||||| Sbjct 16879623 GGCTGTGGGCATCGGCGCCATGAGCAGACTGTT 16879591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588932585106600