Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 190 2e-43 seq11 109 6e-19 >seq6 Length=67274854 Score = 190 bits (210), Expect = 2e-43 Identities = 955/1489 (64%), Gaps = 52/1489 (3%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| || || || || Sbjct 22087153 CTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTAAC 22087212 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 |||| |||||||| | |||| || | |||||||| | ||||||| ||| | Sbjct 22087213 AATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCTTCGAT 22087272 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || ||||||| ||| || |||||||| ||||| ||||| || || | || || Sbjct 22087273 GGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGCAGCAG 22087332 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTG 106078 || || | | || | || ||| || || || | | |||||| | | | Sbjct 22087333 GCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCACAGGTC 22087392 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAAC 106136 | | || || | ||||||| || |||| || | |||||| ||| |||| || Sbjct 22087393 TG-TAGGCGTCTTGT-CCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGA--AC 22087448 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | || | ||||| || | || | |||| | || |||||||||||||| | | Sbjct 22087449 CTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCAG 22087508 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || ||||| ||||| || | || | | || || || || || | Sbjct 22087509 CGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAGG 22087568 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 || || || || || |||| || | ||||||||| || | || || || |||| Sbjct 22087569 GATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTGT 22087628 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 106373 | ||| | || ||||| | ||| ||| || || || | || | |||||||| Sbjct 22087629 GGCGCTTGTTGGACTT---CTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCT 22087685 Query 106374 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA-AGTTTTTCATAATCAAAAGTG 106432 ||| || |||||| || || || || | ||| || || | | |||||||| Sbjct 22087686 TGTTGAGGTTTTTGACAATAACTTTGGTCACAG-ATGCCAGCTTCTTGAAGTCAAAAGTC 22087744 Query 106433 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 106492 || ||| |||| ||| | || || || || || | || || || ||| | Sbjct 22087745 CGT---TCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACC 22087801 Query 106493 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCC 106552 || || || |||||||| | || ||| || |||| |||| | || || || ||| Sbjct 22087802 TCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCC 22087861 Query 106553 AAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 106612 | ||||| ||||||||||| |||| || ||||| ||||| |||||||| ||||| ||| Sbjct 22087862 AGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCC 22087921 Query 106613 GTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT 106671 || || ||||| |||| | ||| || | ||| | | | | | || || || || Sbjct 22087922 GTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCTGAGCCTTCACCACACGC-TT 22087980 Query 106672 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 106730 ||| ||||| || || || ||||| || |||||||||||| ||| | || | Sbjct 22087981 CACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTC-CCCCCAGCACT 22088039 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCAA 106787 || || || || || || ||||| | || ||||| ||| || |||| | Sbjct 22088040 CGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCC---A 22088096 Query 106788 CCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCT 106847 | | ||||||||| || |||||||||||||||| | ||||| ||||| | || Sbjct 22088097 CTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCT 22088156 Query 106848 CTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 106906 | || | ||| ||| || | | ||| ||||| || | | ||| |||||||||| Sbjct 22088157 CCTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGC 22088215 Query 106907 TCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGC 106962 || || || | || | | ||| |||| | ||| | |||| |||||||| || Sbjct 22088216 TCCAGGTACATGGCAAAGGCTCCAGGTCTTTTG-TTCCCCCCCTGATCAACATAGCGAGC 22088274 Query 106963 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCC 107021 || ||| | || | | ||| || | | || | || | |||||| || || | Sbjct 22088275 AGTATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGC 22088334 Query 107022 GA-ATA---CGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCC 107077 || || | | || || || ||| | || || ||||| || || || Sbjct 22088335 GATGTAGCTCCCGGTTGAT---CTGATACAGC--TGACCGCCACGCCAATGCCTCCGGCG 22088389 Query 107078 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 107137 | || || || | ||||||| | ||||||| |||| || || | ||| ||| || Sbjct 22088390 GATTTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCT 22088449 Query 107138 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAGA 107195 || |||||| |||||||| ||||||| ||| || | ||| || || || ||||||| Sbjct 22088450 TTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTTG--GTTCCTGCGTTGAAGA 22088507 Query 107196 GGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACA 107254 ||||||||| ||||| ||||| || | | |||| | || ||| ||||| | | | Sbjct 22088508 GGGTTGGTGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCT 22088566 Query 107255 GAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | ||| |||||| | | ||||| || | | ||| | ||| | ||||| Sbjct 22088567 GCATCGATGTCTCTCTCATGGATCCCAACAGACACCCTCATGAGCATGT 22088615 >seq11 Length=48234189 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||||||||| | ||||||||||| || || || |||| ||| ||||| || || Sbjct 16878787 CTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCC 16878728 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 16878727 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCC 16878668 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || ||||| |||| || || || | ||||| Sbjct 16878667 GGTTTCTGTCTGCGACTCGATGATAGCGTACCACA 16878633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589937311040280