Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq11 132 1e-25 seq1 87.8 4e-12 >seq11 Length=48234189 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || ||||| ||||| || | || || | |||||||| Sbjct 21619911 ACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCA 21619970 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| || |||||||| ||||| || Sbjct 21619971 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGG 21620030 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||| |||||||||||||| |||| || || || ||||| | ||| Sbjct 21620031 ATCTTAGCTTTGACATTCTCAATGGTGTC---ACTTGGCTCGACCTCCAGGGTGATGGTC 21620087 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| | || || || || | |||||| Sbjct 21620088 TTTCCTGTGAGGGTCTTGACAAAGATCTGCATT 21620120 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || ||||| ||||| || | || || | |||||||| Sbjct 21620139 ACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCA 21620198 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| || |||||||| ||||| || Sbjct 21620199 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGG 21620258 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||| |||||||||||||| |||| || || || ||||| | ||| Sbjct 21620259 ATCTTAGCTTTGACATTCTCAATGGTGTC---ACTTGGCTCGACCTCCAGGGTGATGGTC 21620315 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | || || || || | ||||| Sbjct 21620316 TTTCCAGTAAGGGTCTTGACAAAGATCTGCAT 21620347 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || ||||| ||||| || | || || | |||||||| Sbjct 37620324 ACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCA 37620383 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| || |||||||| ||||| || Sbjct 37620384 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGG 37620443 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||| |||||||||||||| |||| || || || ||||| | ||| Sbjct 37620444 ATCTTAGCTTTGACATTCTCAATGGTGTC---ACTTGGCTCGACCTCCAGGGTGATGGTC 37620500 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 37620501 TTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 >seq1 Length=98476147 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 125539 GGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAAGAAAAGAGACACAAC 125598 ||||| |||||||| |||||| ||||||||| | || ||| ||||||||||| ||| Sbjct 27764855 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCACGTCTAAGAATGGAAAAGAGACATAAC 27764914 Query 125599 TATTTGAGGAAAGTCGCAGAGAATGCAACTCAA-TGTTT-TTTGCAA-GACAACAAGTGC 125655 ||| |||| ||||| || |||| || ||| | ||| ||| ||| |||| ||||| Sbjct 27764915 TATGTGAGAAAAGTAGCCGAGACAGCTGTCCAACTCTTTGTTTCCAATGACA--AAGTG- 27764971 Query 125656 AACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAAGCTTCTGGAATCT 125715 || || ||||| ||| | ||||| || || || ||||| || | ||| | ||| Sbjct 27764972 AATGTGGCGGGGATGGTCCTGGCTGGCTCTGCTGACTTCAAGACTGAACTTAGTCAGTCT 27765031 Query 125716 GACCTTTTCGACC 125728 ||| | || |||| Sbjct 27765032 GACATGTTTGACC 27765044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109397772770999