Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 277 2e-69 >seq6 Length=67274854 Score = 277 bits (306), Expect = 2e-69 Identities = 980/1535 (64%), Gaps = 15/1535 (1%) Strand=Plus/Plus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 || |||||||||||||| || || |||||||| || || || || | || || || || Sbjct 22087199 AGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTG 22087258 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 || || | ||| || || || || || || | || || || || || ||||| ||||| Sbjct 22087259 GTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATC 22087318 Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC 47489 | || | | | ||||||||| || |||| ||| |||| | ||| Sbjct 22087319 GGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTC 22087378 Query 47490 CAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTT 47549 || ||||| || |||| || | ||| | || ||||| || || || || || Sbjct 22087379 CAGTCCCACAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTG 22087438 Query 47550 ATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCT 47609 | || ||||| | || || | || || ||| | ||| || || || || || Sbjct 22087439 ACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCC 22087498 Query 47610 TCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGAT 47669 |||| ||| || || || || ||||| || | |||||||| | || |||| Sbjct 22087499 TCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGG 22087558 Query 47670 GATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729 ||| || ||||| || | ||||||||| |||||||| ||||| || Sbjct 22087559 CTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCT 22087618 Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789 ||||| || || || || || ||||||||| || | ||| || | ||| || || Sbjct 22087619 ATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCA 22087678 Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNN---ACAATTTCTCTTAATTTATTAAAA 47846 || | || || || ||| | | | || || || Sbjct 22087679 ATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGATGCC---AGCTTCTTGAAG 22087735 Query 47847 TCAAACTT--GTTATT-TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACA 47903 ||||| | ||| | | | || || | || || || || || || || ||||| || Sbjct 22087736 TCAAAAGTCCGTTCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACC 22087795 Query 47904 GCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATA 47963 || ||||| | | | || || | | | ||| | || || || | |||||||| Sbjct 22087796 GCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATG 22087855 Query 47964 GTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGT 48023 || |||| ||| || || ||| | |||||||||| || ||||| ||||| | || Sbjct 22087856 GTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGC 22087915 Query 48024 GTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACA 48083 ||||| |||||| |||| || ||||| || | | ||| | | |||||| | ||| Sbjct 22087916 GTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCTGAGCCTTCACCACA 22087975 Query 48084 -GCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA 48142 ||| | | | || | ||| |||||||| || | || ||||| || ||||| | Sbjct 22087976 CGCTTCACCCTCCCC-TCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCA 22088034 Query 48143 -CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTT 48201 ||| | || | ||||||||| || || |||||||| | ||||| | | | | | | Sbjct 22088035 GCAC-TCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCT 22088093 Query 48202 TTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTT 48260 ||||| |||| || | |||||| ||||| || || ||| || | || || | ||| Sbjct 22088094 CCACTCTCTTCATGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTC 22088152 Query 48261 AGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCAT 48320 | || || || || | ||| | || || || || ||||| | | |||| |||||| Sbjct 22088153 TGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAT 22088212 Query 48321 GGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTG 48380 || || | || || || | | || |||| ||| || || || ||||| | ||| | Sbjct 22088213 GGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGA 22088272 Query 48381 GCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCC 48440 ||||||||||| |||||||| ||||| || || | || || || |||||||||| || Sbjct 22088273 GCAGTATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCA 22088332 Query 48441 GAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATT 48500 | || || || || | | ||| ||| || | | | || || || || || | Sbjct 22088333 GCGATGTAGCTCCCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGAT 22088392 Query 48501 TTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATC 48560 || || || || |||||| | ||||| || |||||||| ||||| || || || ||| || Sbjct 22088393 TTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTC 22088452 Query 48561 ATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTT 48620 || | || || || || |||| || || | ||||||| || || | ||| Sbjct 22088453 ATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTT 22088512 Query 48621 GGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCT 48680 || || || || | ||||| |||||||| | || || || || ||||| | | ||| Sbjct 22088513 GGTGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCG 22088572 Query 48681 ATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACA 48740 || || | | ||| || || | ||| || | ||| | ||| | || || | || | Sbjct 22088573 ATGTCTCTCTCATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCC 22088632 Query 48741 ATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTG 48800 | ||| ||| || |||| ||||| || |||| ||||| || || || ||||| Sbjct 22088633 ACTTTTCCATTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTG 22088692 Query 48801 TATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 || || || || | || | ||| || | ||||| Sbjct 22088693 TAAGAGAAATCTCTGTCGTAAATTATGGCCGAATT 22088727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562067365555080