Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-20 seq233 113 4e-19 seq4911 109 4e-18 >seq11 Length=48234189 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || || || || ||||||||||| || || || || || ||||||| Sbjct 12756112 ATGCTGTAATCACAGTTCCCGCCTACTTTAATGACTCTCAGCGCCAGGCCACAAAAGATG 12756053 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct 12756052 CTGGCACAATCTCTGGCCTTAATGTTCTCCGTATCATCAATGAACCAACTGCAGCTGCTA 12755993 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 12755992 TTGCCTATGGGCTGGACAA 12755974 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||||||||| | ||| |||| ||||||||| Sbjct 12756680 GGAATCGATCTGGGGACCACCTACTCCTGTGTTGGTGTGTTCCAACATGGCAAAGTTGAA 12756621 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| ||||| ||||| || || || ||||| | ||||| || | Sbjct 12756620 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGACTCA 12756561 Query 550118 GAACATTTAGTTGGTGATGCAGCAAA 550143 || || |||| ||||||||||| Sbjct 12756560 GAGAGGCTAATTGGAGATGCAGCAAA 12756535 >seq233 Length=80912 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||| | Sbjct 70998 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCAACCAAAGACG 71057 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| || || || ||||||||||| || |||||||| Sbjct 71058 CTGGGACAATCTCTGGTCTTAATGTGCTGCGAATCATCAATGAACCCACAGCTGCTGCTA 71117 Query 550518 TTGCATATGGACTTGATAAA 550537 ||||||| || || |||||| Sbjct 71118 TTGCATACGGCCTGGATAAA 71137 Score = 95.1 bits (104), Expect = 1e-13 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 ||||||| ||||| || ||||| ||| |||||||| | | ||| |||| ||||| | Sbjct 70337 TAGGTATTGATTTGGGTACCACCTATTCCTGTGTTGGAATCTTCCAACATGGCAAAGTGG 70396 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 | |||||||||||||| ||||| ||||| || || || |||||| | ||||| || | Sbjct 70397 AGATTATTGCCAATGACCAAGGAAACAGGACCACACCCAGTTATGTGGCCTTCACAGACA 70456 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATA 550172 |||| | |||| ||||| || || | || |||| || ||||| |||||| Sbjct 70457 CTGAGAGACTCCTTGGAGATGCTGCCAAGAACCAGGTGGCCA-TG--AATCCAGCCAATA 70513 Query 550173 CTATTTTTG 550181 || | |||| Sbjct 70514 CTGTATTTG 70522 >seq4911 Length=55064 Score = 109 bits (120), Expect = 4e-18 Identities = 362/560 (65%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 549983 AACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAA 550042 || || || || || || || || | || ||||| || ||||| || |||| ||| Sbjct 40800 AAAAACGTGGCCATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAA 40859 Query 550043 AATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT 550102 | || ||||| || || || ||||| || || || ||||| || || || ||||| Sbjct 40860 CACGGAAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTG 40919 Query 550103 TCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT 550162 | ||||| || || || | |||| || ||||| || | || | || || Sbjct 40920 GCCTTCACTGACACAGAGAGGCTGATTGGGGACGCAGCCAAGAACCAGGTGGCTCTGAAC 40979 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || | ||| ||| | |||||||| || | | ||||||||||| ||| |||| || Sbjct 40980 CCCAGCAACACTGTGTTTGATGCCAAGAGGCTGATTGGAAGAAGGTTTGATGACTCAGTG 41039 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTAT 550282 || ||||| || |||||||| ||||| ||| | | ||| | | || || || | Sbjct 41040 GTGCAGGCCGACATGAAGCACTGGCCCTTCAAGGTGGTTTCAGATGGAGGGAAGCCCAAA 41099 Query 550283 ATTGAAG----CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATC 550338 ||| ||| ||| | || || | || || || || || | ||||| || Sbjct 41100 ATTCAAGTGGAGTACAAAGGAGAGAAC----AAGACCTTCTCCCCTGAGGAGATTTCCTC 41155 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA 550398 ||||| | |||| ||||| | | || || | | || || | || | | Sbjct 41156 CATGGTCCTGGTGAAGATGAAGGAGATTGCTGAGGCCTACCTGGGCCACAAGGTGTCCAA 41215 Query 550399 TGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGC 550458 || || || || || || || ||||| || ||||| || || || || |||||||| || Sbjct 41216 AGCTGTCATCACGGTCCCGGCCTATTTCAACGACTCCCAGCGACAGGCCACTAAAGACGC 41275 Query 550459 TGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 || ||| || || ||||| || || || | || ||||| || || || || ||||| Sbjct 41276 CGG-CGTCATCGCAGGACTCAACGTCCTGAGGATCATCAACGAGCCCACGGCAGCTGCCA 41334 Query 550518 TTGCATATGGACTTGATAAA 550537 | ||||| ||||| || ||| Sbjct 41335 TCGCATACGGACTGGACAAA 41354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028984140044530