Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8 145 6e-30 seq3162 95.1 1e-14 >seq8 Length=57680405 Score = 145 bits (160), Expect = 6e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||||||||| || || |||||||||||||| |||||||| |||||||| || Sbjct 19730756 CATATCTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATC 19730697 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || |||| | ||||||| ||||||| |||| | | ||| |||||||| || Sbjct 19730696 CCCCTCCTCTCTGTCCGTGAAGCCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATC 19730637 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| ||| | || || || || || ||||| |||| ||||||||||| Sbjct 19730636 CCAAATCCTCACACCTTTGTCTGACAGCTCCTTGGCATTTGTGGACCC 19730589 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | |||||| |||||||| ||||| |||| |||||||||||||| || || Sbjct 19731634 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGC 19731575 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || ||||| || |||| | |||||| |||||||| || ||||| || || | Sbjct 19731574 ACCCCAAGACCCATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACAG 19731515 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||||| ||||| |||| | ||||||||| || |||||||||||| Sbjct 19731514 ACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCATGAGG 19731470 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 |||| |||||||| || |||| |||||| |||| |||||||||||| ||||||||| | Sbjct 19731391 CTTTAGGGTTCCAAGCACACATGATGATCCGCCGGTCTTCTGGGTTTTTCCTGATGGTAT 19731332 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | | | | || |||||||| || || ||| ||| | ||| |||| Sbjct 19731331 CAATGACTTTCTGCAGCTGGTCGACACCCTGCCCTGTGTAATCTG 19731287 >seq3162 Length=15747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 112105 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 112164 |||||||||||||| || | ||| || | ||| | ||||||| ||||| || ||||| Sbjct 3317 AGCTCCCTGCTGAGAACAATGTTGATGCGGTCCTTGAGAGGTCGGTTCTTCTCCGGGATC 3376 Query 112165 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 || ||||| |||||||| ||||| || ||||| |||||||| ||| Sbjct 3377 GAAAACCAGGTCTTTCTCCCCATGATGACCACATTCTGCTTTCCT 3421 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 112270 GGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATA 112329 |||||||| ||||| |||||||| |||||||| |||| || |||||||| || |||||| Sbjct 5511 GGATGCCAGGGCAGGTCTCCGTTCTTCCCGATACCCAGATCAGGACACACCGCGACGATA 5570 Query 112330 CCGTTCAGAATGAGGGGCGTGGTTCG 112355 |||||||||| ||| | |||| || Sbjct 5571 CCGTTCAGAACCCGGGACATGGTCCG 5596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408588232780781