Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 206 5e-48 seq4 132 9e-26 seq11 118 2e-21 seq19 107 4e-18 >seq6 Length=67274854 Score = 206 bits (228), Expect = 5e-48 Identities = 519/784 (66%), Gaps = 20/784 (3%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||| ||||||| ||||||||||||||| ||| |||| || || ||||| || Sbjct 22087501 CAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCT 22087560 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||| ||||| || ||| | || |||| || || ||||| || || || Sbjct 22087561 TTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTAT 22087620 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 |||||||| | | ||||||| | ||||| || || || || |||||| || || Sbjct 22087621 TGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAAT 22087680 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | ||||||||||| || ||||| ||| | |||||||| | | | || Sbjct 22087681 GACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGA-AGTCAA 22087739 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || || ||| ||| | | || | ||| || |||| | ||| || Sbjct 22087740 ----AAGTC-----CGTTCTGGTGTG-----ACGTACATGTTGAGAGCAATGGAGGCAAG 22087785 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||||||||| ||||||||||| ||| |||| |||| | | || || || |||||||| Sbjct 22087786 GTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCT 22087845 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 ||| |||||||| ||||| | | || ||| ||| | || || || ||||| || Sbjct 22087846 GCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAG 22087905 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| | || || || || ||| | | | | ||| | |||||| | ||| | Sbjct 22087906 CATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCT-GCTGAG 22087964 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957 | ||||| | ||| || |||||| |||||||| || || || | |||| Sbjct 22087965 CCTTCACCACACGCTTCACCCTCCCCTCG---TTTTCATATTTAGTGTACAGTTTTTCAA 22088021 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || | ||||||||| || |||||| | ||||||||| || ||||| Sbjct 22088022 ACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGT 22088081 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | ||| | || |||| |||||| || || || |||||||| || | ||||| | Sbjct 22088082 TTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAGAAGAGGT 22088141 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 |||||| | |||||||||| || |||| ||| |||| |||| || ||||| | | Sbjct 22088142 CTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACAT 22088201 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 || |||||| |||||||| || | ||| | || || |||| ||||| || ||||||| Sbjct 22088202 CAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGAT 22088261 Query 222198 CCAC 222201 | || Sbjct 22088262 CAAC 22088265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 181/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 221028 CTTGTACAGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCC 221087 |||| ||||| || |||||| | | || | | |||||| || |||| || ||| Sbjct 22087119 CTTGAACAGATCCGTTGTTGGCGATCAGACTGTTCTTCATCTCCTCGCTCCACAGCCCCT 22087178 Query 221088 TCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCC 221147 |||| ||| | |||| || ||| || || | ||||| ||||| ||||| |||| Sbjct 22087179 TCTCCGTCAGGTCTTTGAGCAGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCC 22087238 Query 221148 TCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAG 221207 | | ||| | ||| ||| | | ||||||| ||||||||| ||||||||||| | Sbjct 22087239 TGCGAGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGG 22087298 Query 221208 CCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAATCTATTGA 221267 | ||| || |||||||| || || | |||||| || || | || || | || || Sbjct 22087299 CGGTGGACGCTGTGGGCATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGA 22087358 Query 221268 TGGACTTTCTCAGCGTGTTCCAGTCACA 221295 | || | ||||| |||||||| || Sbjct 22087359 TCTTCTCTTTCAGCAGCTTCCAGTCCCA 22087386 >seq4 Length=75030901 Score = 132 bits (146), Expect = 9e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||||||||| |||||||| ||||| ||| |||||| ||||| Sbjct 61475909 GGAGAGCGTGTGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTTGCT 61475850 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| ||| |||||||| ||| ||| |||||||||| Sbjct 61475849 GCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 61475790 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 61475789 ATCAGCAGAGACGAGG 61475774 Score = 123 bits (136), Expect = 5e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||||||||| |||||||| ||||| ||| |||||| || || Sbjct 61466013 GGAGAGCGTGTGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTCGCT 61466072 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||| ||| ||| ||| |||||||| ||| ||| |||||||||| Sbjct 61466073 TCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 61466132 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 61466133 ATCAGCAGAGACGAGG 61466148 >seq11 Length=48234189 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| |||||||| ||||||||||| || || |||||||||| |||||||||||| Sbjct 16878320 CATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGATCTCTGGCCCGCTGCTCCTCTTT 16878261 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| ||| |||| |||||||| ||||| | ||| | |||||||||||||| || Sbjct 16878260 GCCCGTGTTCTTCTTCAGTTCCAAAAAGTCAAACACGTCTGAATGCCACGGCTCCAGGTA 16878201 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || ||||||| || Sbjct 16878200 CACAGCAAACGCCCCGGGTCTCT 16878178 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || || || ||||| ||||| | ||| | ||| ||| ||| |||||| Sbjct 16879715 ACCTGAAACTCCCCGGAGAGAACCCTGCGAGTGTAGATGTTGCTGGTGTACGCCTCGATG 16879656 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| ||||||||||| |||||||| ||| ||| |||||||| || |||| |||||| Sbjct 16879655 GACTCATTGTTGCCCAGAATCTGAGCGGTGGAGGCTGTGGGCATCGGCGCCATGAGCAGA 16879596 Query 221243 CTGTTGCGCAGTCCG 221257 ||||| | || |||| Sbjct 16879595 CTGTTCCTCACTCCG 16879581 >seq19 Length=25483538 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||||| || || ||||| |||||||||||| |||| ||| || |||||||| Sbjct 15262110 GGAGAGCGGCTTGTGGCTTTTGCAGCTGTGGAGGGCGTCTTCTTCTCGGGCTCGTTTGCT 15262051 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| |||||| ||| ||| ||| ||||| || || | ||||||||||| Sbjct 15262050 GCCATCTACTGGCTGAAGAAGAGGGGTCTGATGCCTGGCCTCACCCACTCCAACGAGCTG 15261991 Query 25993 ATCAGCAGGGACGA 26006 ||||||||||| || Sbjct 15261990 ATCAGCAGGGATGA 15261977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928776332527680