Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq11 116 2e-20 seq233 107 1e-17 >seq11 Length=48234189 Score = 116 bits (128), Expect = 2e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| ||||| || ||||| || || |||||||| ||||| || || || || ||||||| Sbjct 12756112 ATGCTGTAATCACAGTTCCCGCCTACTTTAATGACTCTCAGCGCCAGGCCACAAAAGATG 12756053 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || ||||||||| | ||||| || ||||||||||| ||||| || Sbjct 12756052 CTGGCACAATCTCTGGCCTTAATGTTCTCCGTATCATCAATGAACCAACTGCAGCTGCTA 12755993 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| || || ||||| Sbjct 12755992 TTGCCTATGGGCTGGACAAGAA 12755971 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| ||||| |||||||| || || | || ||||| || || || |||||||| Sbjct 37620377 ATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTT 37620436 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||||| ||||| || ||| | | || ||||| || Sbjct 37620437 GTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGAT 37620496 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| ||||| || || || || Sbjct 37620497 GGTCTTACCAGTGAGGGTCTTGACAAAGATCTG 37620529 >seq233 Length=80912 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || || ||||| || || || ||||| ||||| ||||||||||| ||||| | Sbjct 70998 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCAACCAAAGACG 71057 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | ||||||||||| | || || || |||||||| ||||| || || Sbjct 71058 CTGGGACAATCTCTGGTCTTAATGTGCTGCGAATCATCAATGAACCCACAGCTGCTGCTA 71117 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| || || || ||||| || Sbjct 71118 TTGCATACGGCCTGGATAAAAA 71139 Score = 102 bits (112), Expect = 5e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| |||||| | || || || || |||| || || | ||| | || || Sbjct 72181 TGAAGGGGAAAGAGCCATGACCAAGGACAACAACATCCTGGGGAAATTTGAACTGACTGG 72240 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| ||||||||||||||||||||||| ||||| || || ||||| |||||||| || Sbjct 72241 TATTCCACCTGCTCCCAGAGGAGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 72300 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| || || ||||| |||| Sbjct 72301 TGGCATCCTCAATGTATCTGC 72321 Score = 89.7 bits (98), Expect = 3e-12 Identities = 164/230 (71%), Gaps = 13/230 (6%) Strand=Plus/Plus Query 474502 TGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-G 474560 ||||| ||||||| |||||||| | ||||||||||||| | ||||||| ||| | | Sbjct 70682 TGTTACATCTATTTTAGATGCTAAGCGTCTGATTGGTCGTAAGTATGATGAT-CCAGTAG 70740 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA 474620 ||||||| || ||| || ||||| || ||||| || |||| ||||| | | Sbjct 70741 TCCAATCCGACATGAAACACTGGCCCTTCAAGGTTATTAATGACTCCTCAAAACCCAAGA 70800 Query 474621 TAGAAG--CAATACACGCAGGTGAAA-CTAAACAATTTTCACCGGAACAAATTTCTTCAA 474677 |||| | |||||| | ||||||| | |||| ||||| || || | |||||||||| Sbjct 70801 TAGAGGTTGAATACAAG--GGTGAAATCAAAACCTTTTTC-CCTGAGGAGATTTCTTCAA 70857 Query 474678 TGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAG 474725 |||| | |||||||| ||| | | |||| |||||||| |||| Sbjct 70858 TGGTCCTCAATAAAATGAAGGAAATCTCTGAAGCT--TATCTTGG-CAAG 70904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267926249057756