Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 104 1e-17 >seq6 Length=67274854 Score = 104 bits (114), Expect = 1e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||| ||| ||| ||| || | |||||||||||||| ||||| || | ||||| ||||| Sbjct 22088092 CTCCACTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCT 22088151 Query 25981 CATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCC 26039 | || || ||||| ||| ||||| || || || | ||| ||||| | ||| |||||| Sbjct 22088152 CTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCC 22088210 Query 26040 ATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATC 26099 |||| || | || || ||||| || |||||| || || ||||| || || | Sbjct 22088211 ATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGC 22088270 Query 26100 TTGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 ||||| | ||| ||||| ||||||| || || Sbjct 22088271 GAGCAGTATTGTTGTAAACTCTCAACATGGGCAC 22088304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253021814094275