Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 203 4e-47 seq11 100 3e-16 >seq6 Length=67274854 Score = 203 bits (224), Expect = 4e-47 Identities = 962/1496 (64%), Gaps = 52/1496 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| | | || ||||| | | |||||| ||| | | | Sbjct 22088622 CCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATCCATGAGAGAGACATCGATGCAGCC 22088563 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||||| ||||||||||||| Sbjct 22088562 ATTGAGACGTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCACCAACCCTCTT 22088504 Query 75331 CAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | || ||| ||||||| |||||||| |||||| || || Sbjct 22088503 CAACGCAGGAAC--CAACCGGCCACAGCTGTCCAGCTGCTTCCTCCTCGCCATGAAAGAC 22088446 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || || |||| ||||||| | ||||||| | || || || | || Sbjct 22088445 GACAGCATCGAAGGCATTTATGACACTCTTAAGCAGTGTGCCCTCATTTCCAAATCCGCC 22088386 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCG---TAT-TCGGGG 75504 || || ||||| || || | ||| || || || | | || ||| | Sbjct 22088385 GGAGGCATTGGCGTGGCGGTCA--GCTGTATCAG---ATCAACCGGGAGCTACATCGCTG 22088331 Query 75505 G-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || |||||| | || | || | | || ||| | | || | ||| || || | Sbjct 22088330 GTACCAATGGTAACTCCAACGGGCTGGTGCCCATGTTGAGAGTTTACAACAATACTGCTC 22088271 Query 75564 GCTATGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCA 75619 ||||||| |||| | |||| | ||| || || | || | ||| |||| ||| Sbjct 22088270 GCTATGTTGATCAGGGGGGGAA-CAAAAGACCTGGAGCCTTTGCCATGTACCTGGAGCCA 22088212 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||| ||| | | || ||||| ||| | | || ||| ||| | || ||| Sbjct 22088211 TGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAG-AACACAGGAAAGGAGGAGCA 22088153 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 | ||||| ||||| | |||||||||||||||| || ||||||||| | || Sbjct 22088152 GAGAGCCAGAGACCTCTTCTATGCCCTGTGGATTCCAGATCTGTTCATGAAGAGAGT--- 22088096 Query 75739 GGAGGGTGGTCAA---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-G 75794 |||| || ||| ||||| || | ||||| || || || || || ||| | Sbjct 22088095 GGAGAGTAACCAAAACTGGTCCCTAATGTGTCCCAACGAGTGTCCTGGGCTGGACGAGTG 22088036 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 | | ||| |||||||||||| || ||||| || |||||| | ||||| || | || | Sbjct 22088035 CTGGGGG-GAGGAGTTTGAAAAACTGTACACTAAATATGAAAACGAGGGGAGGGTGAA-G 22087978 Query 75855 CGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 || || || | | | | | ||| | || ||| | | || ||||| || || ||| Sbjct 22087977 CGTGTGGTGAAGGCTCAGCAGCTCTGGTATGCCATTATTGAGTCCCAGACAGAAACGGGA 22087918 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 || ||||| ||||| ||||| ||||| ||||||| |||||||||||| ||||| |||| Sbjct 22087917 ACGCCATACATGCTGTACAAAGATGCATGTAACAGGAAGAGTAACCAGCAGAATCTGGGC 22087858 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||||| || || || ||||| ||| || | |||||||| || || ||| | Sbjct 22087857 ACCATCAAATGCAGCAACCTGTGCACCGAAGTTGTTGAGTACACCAGCAAAGACGAGGTG 22087798 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093 || || || || | || || || || || | ||| |||| ||| || ||| Sbjct 22087797 GCGGTGTGTAACCTTGCCTCCATTGCTCTCAACATGTACGTCACACCAGA---ACGGACT 22087741 Query 76094 TTTGATTATGAAAAACT-TCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 ||||| | | || || ||| | || || || || |||||| || ||| || Sbjct 22087740 TTTGACTTCAAGAAGCTGGCAT-CTGTGACCAAAGTTATTGTCAAAAACCTCAACAAGGT 22087682 Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 |||||| | || | || || || ||| ||| | ||||| || | ||| ||||| Sbjct 22087681 CATTGAAATCAACTACTACCCAGTTCCTGAAGCTGAG---AAGTCCAACAAGCGCCACAG 22087625 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATT 76269 || || || | || ||||||||| | || |||| || || || || || | || Sbjct 22087624 GCCAATAGGAATTGGAGTTCAAGGTTTGGCAGATGCCTTCATCCTGATGCGTTATCCCTT 22087565 Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329 || || || || | | || | || ||||| ||||| || |||| | Sbjct 22087564 CGAAAGCCCAGAGGCTCAGTTGCTAAACATCCAGATTTTTGAGACCATCTACTACGCTGC 22087505 Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 ||||||||||| || || | |||| | || | || ||||| | || ||| Sbjct 22087504 TCTGGAGGCGAGCTGCGAGCTAGCTGCCGAGTTCGGACCGTACGAGACCTACGAAGGT-- 22087447 Query 76390 TCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC 76447 |||| ||| |||||| | || || | || ||||||| | || || | | | | Sbjct 22087446 TCCCCTGTCAGCAAGGGCATCCTGCAATACGACATGTGGG-ACAAGACGCCTA-CAGACC 22087389 Query 76448 --TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT 76505 | |||||| | | || || || ||| | | || | | || || || Sbjct 22087388 TGTGGGACTGGAAGCTGCTGAAAGAGAAGATCGCTAAACATGGCGTGAGAAATAGCCTGC 22087329 Query 76506 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 76565 || | || || ||||| ||||| |||||||| || ||| ||||||| || || | | | | Sbjct 22087328 TGCTCGCCCCGATGCCCACAGCGTCCACCGCCCAGATCCTGGGTAACAACGAGTCCATCG 22087269 Query 76566 AACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCA 76625 || | ||||| | ||||||||| | || |||| | || ||||| ||||| | Sbjct 22087268 AAGCCTACACCAGCAACATCTACACTCGCAGGGTCCTCTCTGGAGAGTTCCAGATTGTTA 22087209 Query 76626 ACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 | ||||| |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 22087208 ATCCTCACCTGCTCAAAGACCTGACGGAGAAGGGGCTGTGGAGCGAGGAGATGAAG 22087153 >seq11 Length=48234189 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | ||||| || | || ||||| || || ||||| || || ||||| |||||||| Sbjct 16878635 TGGTACGCTATCATCGAGTCGCAGACAGAAACCGGAACGCCGTACATGCTCTACAAGGAC 16878694 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||| ||||| |||| |||| || || || | ||||| ||| Sbjct 16878695 GCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATTAAATCCAGCAATCTGTGC 16878754 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || ||||||||||| | ||||||||| Sbjct 16878755 ACTGAGATAGTAGAGTACACAAACAAGGATGAG 16878787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596525625363360