Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 122 3e-22 seq4 87.8 5e-12 >seq6 Length=67274854 Score = 122 bits (134), Expect = 3e-22 Identities = 376/573 (66%), Gaps = 14/573 (2%) Strand=Plus/Plus Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG---TATTCTACA 155639 ||| |||| || || || ||||| ||||| | ||| ||| | |||| || || ||| Sbjct 22087769 AGAGCAATGGAGGCAAGGTTACACACCGC---CACCTCGTCTTTGCTGGTGTACTCAACA 22087825 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 | || ||||||||| | ||||||||||| | ||||| ||||||| || ||| Sbjct 22087826 ACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTG 22087885 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 ||||| ||||| ||||| || |||||||| ||||| || || |||| | || | ||| Sbjct 22087886 TTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATG 22087945 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 |||||| | | || || | || || || || |||||||| Sbjct 22087946 GCATACCAGAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCGTTTTCATATTTA 22088005 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 | ||||| || | ||||| || | || || ||| ||||| |||| | ||| Sbjct 22088006 GTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGA 22088065 Query 155880 CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939 || | || ||||| ||| |||| || | || ||| || | ||| ||| Sbjct 22088066 CACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCAC 22088125 Query 155940 ATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCT 155997 | |||||||| ||||| || || || || |||||| | || ||| |||||| |||| Sbjct 22088126 AGGGCATAGAAGAGGTCTCTGGCTCTCTG-CTCCTCCTTTCCTGTG-TTCTTCTTCAGCT 22088183 Query 155998 CTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC 156057 | | ||| || | |||| || ||||||||| ||||| ||||| ||| | Sbjct 22088184 CCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTC 22088243 Query 156058 TCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA 156114 | ||| || |||||||| ||||| |||||||| || ||| | || | | ||| || | Sbjct 22088244 TTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGGCA 22088303 Query 156115 TAATACCATTGGAAGTGCCATTGGTTCC-GCGA 156146 | || ||||| | |||||||| || |||| Sbjct 22088304 CCAGCCCGTTGGAGTTACCATTGGTACCAGCGA 22088336 >seq4 Length=75030901 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 ||||||||||| ||||| || ||||| | | || ||||| || |||||||| | |||| Sbjct 36502737 GTTTTTACAGCCGTATCGATCAGACCCTCTCTGCCTCCCATGGCGTGGAAGAAGAACTCT 36502678 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 || ||| || || | | ||||| |||| || || || | ||| || | Sbjct 36502677 GTGGG-CGTGAGTCCAGCCAGGTAGGAGTTCTCCACAAACCCTCTGCTCTCTGGACCGTA 36502619 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 ||| |||| | ||||| ||||| |||| || || ||||| | ||||| ||||| || Sbjct 36502618 GTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCGAACGGGATTCGCTTACC 36502559 Query 302799 ATCAACGTTCTGCTGTCCCA 302818 || ||||||||||| |||| Sbjct 36502558 TTCCACGTTCTGCTGGCCCA 36502539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471706396361289