Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 152 5e-32 seq11 109 5e-19 >seq6 Length=67274854 Score = 152 bits (168), Expect = 5e-32 Identities = 930/1470 (63%), Gaps = 49/1470 (3%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | | || | || |||||||| ||||| ||||| || |||| Sbjct 22087246 GTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGA 22087305 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGA--AGCTTGATTCGT 138657 ||| || ||||| || | || || ||| | | || || ||| ||| Sbjct 22087306 CGCTGTGGGCATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTC-- 22087363 Query 138658 TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGT 138717 || || ||| | ||||||||||| || |||| | |||| |||||| ||||| || Sbjct 22087364 TCTTTCAGCAGCTTCCAGTCCCACAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGC 22087423 Query 138718 AACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCC 138777 | || ||| || | || |||||||| | ||||| || ||||| || Sbjct 22087424 AGGATGCCCTTGCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCT 22087483 Query 138778 AACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC 138837 | |||| ||||||||| || ||| | ||||| || || || |||||| || ||| Sbjct 22087484 AGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGC 22087543 Query 138838 AATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCT 138897 || | ||||| | ||| ||| | || || | || |||| || || |||| ||| Sbjct 22087544 AACTGAGCCTCTGGGCTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCT 22087603 Query 138898 TGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATA--- 138954 || || || | ||| | || | |||||| || ||| || | ||||| | Sbjct 22087604 TGAACTCCAATTCCTATTGGCCTGTGGCGCTTGTTGGAC---TTCTCAGCTTCAGGAACT 22087660 Query 138955 GGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGC 139014 || || ||||| | || |||| ||||| | ||| || | || || ||| | | Sbjct 22087661 GGGTAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACA-GA 22087719 Query 139015 TTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTT 139073 | | | | | || || | || ||||| | || ||||| ||| |||| Sbjct 22087720 TGCCAGCTTCTTGAAGTCAAAAGT----CCGTTCTGGTGT--GACGT--ACA----TGTT 22087767 Query 139074 GACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAAT 139133 || | ||| ||||| | ||| ||||||||||| ||||| | | |||| || |||| Sbjct 22087768 GAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAAC 22087827 Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193 ||||| |||| || || || ||||| || || | ||| || || || || || | ||| Sbjct 22087828 TTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTT 22087887 Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAA 139253 ||| ||||||||||| ||||| || || || || ||||| || | ||| |||||| Sbjct 22087888 ACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGC 22087947 Query 139254 TTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTT 139311 | | | | | ||| | | || | | | | | | ||| || || || Sbjct 22087948 ATACCAGAGCTGCTGAGCCTTCA--CCACACGCTTCACCCTCCCCTCGTTTTCATATTTA 22088005 Query 139312 TCGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCA 139368 ||| |||| || || || | | || | | |||| || | |||||| || Sbjct 22088006 GTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTC---CAGCCCAGGACACTCGTTG 22088062 Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428 |||||||| || ||||| ||| || || | | ||||||||||||| |||||| Sbjct 22088063 GGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATC 22088122 Query 139429 CACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG 139488 |||| || | | | || | || ||| || ||| || |||| |||| Sbjct 22088123 CACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGC 22088182 Query 139489 TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTC 139548 | ||||| ||||| || ||| ||||||||| ||||| || ||||| | || || Sbjct 22088183 TCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGT 22088242 Query 139549 CGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGC 139605 | |||| || || ||||| || | || ||| ||| ||| | || | |||||| ||| Sbjct 22088243 CTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGGC 22088302 Query 139606 TCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT----GTTGCGAGCTCGGAC 139661 |||| ||| | | | || ||||| | | |||| || ||| || || || Sbjct 22088303 ACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCGGTT--GATCTGATAC 22088360 Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAA 139721 | || || | ||| || || ||| | ||||||| || | | || | || ||| Sbjct 22088361 AGC-TG-ACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACT-GCTTAA 22088417 Query 139722 -TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAA 139780 || || || || ||| ||||||||||| | ||| | || || ||||| || | Sbjct 22088418 GAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACA 22088477 Query 139781 GTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGT 139839 | || || | || || || || || || || || ||||| ||||| || || | Sbjct 22088478 GCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAACCACTTCT 22088537 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899 | |||| || | |||||| || ||||| | || || || | ||||| || ||| Sbjct 22088538 CT-GACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTCATGGATCCCAACA 22088596 Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGA 139959 || || | ||| ||||| || || || |||||||| || | ||| || |||| Sbjct 22088597 GACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATTGATCTTCAGCAGA 22088656 Query 139960 TAACCGTTCTCTAGGGTCTTGTAGCCAAAG 139989 || | ||| ||||| ||| |||| ||| Sbjct 22088657 TAGGAGCGCTCCAGGGTTTTGAAGCCGAAG 22088686 >seq11 Length=48234189 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || || || || || | | Sbjct 37620760 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCAAGT 37620701 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || ||||| || || Sbjct 37620700 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 37620641 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||||||||| ||| | | | | ||||| || ||| Sbjct 37620640 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 37620581 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 37620580 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 37620546 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || || || || || | | Sbjct 37620532 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCAAGT 37620473 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || || ||||| Sbjct 37620472 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 37620413 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || ||| | | | | ||||| || ||| Sbjct 37620412 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 37620353 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || || ||| | || |||| Sbjct 37620352 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 37620318 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 21620119 ATGCAGATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGCCAAGT 21620060 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || || ||||| Sbjct 21620059 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 21620000 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || ||| | | | | ||||| || ||| Sbjct 21619999 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 21619940 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || || ||| | || |||| Sbjct 21619939 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 21619905 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 21620347 ATGCAGATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTCGAGCCAAGT 21620288 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || || ||||| Sbjct 21620287 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 21620228 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || ||| | | | | ||||| || ||| Sbjct 21620227 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 21620168 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || || ||| | || |||| Sbjct 21620167 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 21620133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || ||||| || || || | |||||||||| || ||| Sbjct 37620023 AAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAA 37619964 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | | ||||| || ||||| || ||||| || || || ||| Sbjct 37619963 CAGCTGGAAGATGGCCGTACCCTCTCAGACTACAACATCCAGAAGGAGTCCACCCTCCAC 37619904 Query 24908 TTGGTGTTGCG 24918 | || |||| Sbjct 37619903 CTTGTCCTGCG 37619893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449864436923160