Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq233 113 3e-19 seq11 104 2e-16 >seq233 Length=80912 Score = 113 bits (124), Expect = 3e-19 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| || || || |||| ||||||||| || |||||||| || |||| || ||| Sbjct 71139 TTTTTATCCAGGCCGTATGCAATAGCAGCAGCTGTGGGTTCATTGATGATTCGCAGCACA 71080 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||||| ||| | || || ||||| || ||||| | || || || || || || Sbjct 71079 TTAAGACCAGAGATTGTCCCAGCGTCTTTGGTTGCTTGACGCTGAGAGTCATTGAAGTAA 71020 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 |||||||| || ||||| |||| |||| Sbjct 71019 GCAGGAACTGTGATAACTGCAT-TGTT 70994 >seq11 Length=48234189 Score = 104 bits (114), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| |||| |||||| |||||||||||||| || || | | |||| Sbjct 12755971 TTCTTGTCCAGCCCATAGGCAATAGCAGCTGCAGTTGGTTCATTGATGATACGGAGAACA 12756030 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | || |||||||| ||||| || | || || || ||||| || Sbjct 12756031 TTAAGGCCAGAGATTGTGCCAGCATCTTTTGTGGCCTGGCGCTGAGAGTCATTAAAGTAG 12756090 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 || ||||| || || || |||| |||| Sbjct 12756091 GCGGGAACTGTGATTACAGCAT-TGTT 12756116 Score = 89.7 bits (98), Expect = 4e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | ||| |||||||| || | ||| | || | || |||||||||||||| || Sbjct 12756497 CAAACACAGTGTTGGTTGGGTTCATGGCAACCTGGTTCTTTGCTGCATCTCCAATTAGCC 12756556 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 12756557 TCTCTGAGTCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 12756616 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 | ||||||||||| |||| ||| | ||||| ||||| Sbjct 12756617 TGATTTCAACTTTGCCATGTTGGAACACACCAACACA 12756653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740340882220722