Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq11 154 3e-32 seq4 91.5 3e-13 seq17 89.7 1e-12 seq5 87.8 4e-12 >seq11 Length=48234189 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||| || || || || ||||| || || || || || Sbjct 21619893 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21619952 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || |||||||| || Sbjct 21619953 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620012 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| ||||| ||||| ||||| || ||| | || || || Sbjct 21620013 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 21620072 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||| ||||| | ||||| ||||| ||||||||| Sbjct 21620073 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCATT 21620120 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||| || || || || ||||| || || || || || Sbjct 21620121 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21620180 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || |||||||| || Sbjct 21620181 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620240 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| ||||| ||||| ||||| || ||| | || || || Sbjct 21620241 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 21620300 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||| || || ||||| || || | ||||| ||||| |||||||| || Sbjct 21620301 TCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCATGAT 21620350 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||| || || || || ||||| || || || || || Sbjct 37620306 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 37620365 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || |||||||| || Sbjct 37620366 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 37620425 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| ||||| ||||| ||||| || ||| | || || || Sbjct 37620426 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 37620485 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 37620486 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | |||||| || | ||| || || || || ||||| || || || || || Sbjct 37620534 CCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 37620593 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || || || || || ||||| Sbjct 37620594 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 37620653 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| ||||| || || || || || ||| | || || || Sbjct 37620654 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAACC 37620713 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 37620714 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620760 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | |||||| || | ||| || || || || ||||| || || || || || Sbjct 37619881 CCGCCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 37619940 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || || || || || ||||| Sbjct 37619941 AGGGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 37620000 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 || |||||||| || || ||||| ||||| Sbjct 37620001 ATGCCTTCCTTGTCCTGGATCTTGGCTTT 37620029 >seq4 Length=75030901 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 ||||||||||| || || ||||| | |||| ||| ||||| || ||||||||||| ||| Sbjct 63214595 TGGTGGTACTACATCTCCAAAGGAGTGGAATTCTTGGATACAGTCTTTTTCATACTGAGG 63214654 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || ||||| || || || || || | ||||| || || || | ||| ||||| | | Sbjct 63214655 AAGAAGTTCAACCAAGTCAGCTTCCTTCACGTCTACCACCACTGTACCATGTTCATCCTC 63214714 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | ||||| || ||| | |||| || || Sbjct 63214715 TGGTGGATTGGCATCAAGTGGGTCCCCGGTGGGCA 63214749 >seq17 Length=38284538 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || ||||||||||| || || |||||||| || || ||| | || || || || Sbjct 14423067 CCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCGACCTCA 14423008 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || ||||| |||||||| ||||| || || |||||||| Sbjct 14423007 AGAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAGATCTGCAT 14422964 >seq5 Length=70255127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60147 GAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCA 60206 |||| | |||||||||| | ||||| || | ||||| | || || |||||||||| Sbjct 24093055 GAGCTCTGTGGTGGTACTTCGTCTCTAAGGGCGTTGAATATCTGGACACTGTGTTTTTCA 24092996 Query 60207 TACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGT 60266 | || |||||||||| || ||||| | || || ||||| || ||||| | || |||| Sbjct 24092995 TCCTCCGGAAAAAGTTCAACCAGGTCACGTTCTTGCACGTCTACCATCACTGCACCATGT 24092936 Query 60267 TTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | || | | ||| | ||||| || ||| | || ||||| || Sbjct 24092935 TCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 24092893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981753017739083