Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 161 1e-34 seq11 113 4e-20 seq4 84.2 2e-11 >seq6 Length=67274854 Score = 161 bits (178), Expect = 1e-34 Identities = 628/974 (64%), Gaps = 35/974 (4%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||| | |||| || | ||| ||||| || | ||| || | || Sbjct 22087185 TCAGGTCTTTGAGCAGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAG 22087244 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||| | ||||||||||| |||| ||||| ||||| | Sbjct 22087245 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGG 22087304 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT---ATTT 148413 || |||||||| || | |||||| || | || ||| || ||| || | Sbjct 22087305 ACGCTGTGGGCATCGGGGCGAGCAGCAGGCTATTTCTCA---CGCCATGTTTAGCGATCT 22087361 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 | ||||| | ||||||||| || | || ||| || |||||||||||| | Sbjct 22087362 TCTCTTTCAGCAGCTTCCAGTCCCACAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATT 22087421 Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG 148533 |||| ||||| ||| | ||| || ||||| | |||||||||| | | || | Sbjct 22087422 GCAGGATGCCCTTGCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAG 22087481 Query 148534 CCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA 148593 | || |||||||||||||| || || ||||||| || ||||| ||| || |||| | Sbjct 22087482 CTAGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTA 22087541 Query 148594 GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 ||| | ||| ||||||| | || ||||| | | | || || || || | | Sbjct 22087542 GCAACTGAGCCTCTGGGCTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAAC 22087601 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC- 148712 | || || || | || || |||| ||| ||||||| | | || || | Sbjct 22087602 CTTGAACTCCAATTCCTATTGGCCTGTGGCGCTTGTTGGA-CTTCTCAGCTTCAGGAACT 22087660 Query 148713 GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTCT 148771 || |||| |||| || |||| ||||| || || || | || || || | | Sbjct 22087661 GGGTAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGAT 22087720 Query 148772 GCGCAGC------AATTCAAAA--TCGTACTTGTCATCTACGATGCATCGGTTCACGGCG 148823 || |||| || |||||| ||| || || ||| | ||| ||| | || Sbjct 22087721 GC-CAGCTTCTTGAAGTCAAAAGTCCGTTCTGGT--GTGACG-TACAT--GTTGAGAGCA 22087774 Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || ||||| || || ||||| ||| ||| || | | ||||||| || | |||| | Sbjct 22087775 ATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTG 22087834 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 ||||| |||||||||||||| ||||| |||| || || ||||| ||||| || || Sbjct 22087835 CACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCA 22087894 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACC-- 148998 || |||||||||||||| || || ||||| ||| | || | ||| ||| Sbjct 22087895 TCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAG 22087954 Query 148999 -GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057 | ||| | ||| | | ||| ||| | | | ||||| | || ||| ||| Sbjct 22087955 AGCTGCTGAGCCTTCAC---CACACGCTTCAC---CCTCCCCTCGTTTTCATATTTAGTG 22088008 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 ||||| || ||| |||| || |||| ||||| || || || |||| || || ||| Sbjct 22088009 TACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGACAC 22088068 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 || || ||||| || | ||| | |||||| |||||||| || | ||| || Sbjct 22088069 ATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCACAGG 22088128 Query 149178 GCGTACATGAGGTC 149191 || || | |||||| Sbjct 22088129 GCATAGAAGAGGTC 22088142 >seq11 Length=48234189 Score = 113 bits (124), Expect = 4e-20 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| ||||| | ||||||||||||| |||| || ||||| ||||| || | Sbjct 16878773 TGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGGT 16878714 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| |||||||| ||||||||||| ||||||||||| Sbjct 16878713 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 16878674 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 21620150 GGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCA-TCTTCAAGCTGCTTGC 21620208 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || ||||||||||||||||| |||||| | Sbjct 21620209 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTT 21620268 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||| || || | ||||| ||| || || || || | Sbjct 21620269 TGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCAGTAAGGG 21620328 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 21620329 TCTTGACAAAGATCTGCATG 21620348 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 37620335 GGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCA-TCTTCAAGCTGCTTGC 37620393 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || ||||||||||||||||| |||||| | Sbjct 37620394 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTT 37620453 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||| || || | ||||| ||| || || || || | Sbjct 37620454 TGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGG 37620513 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 37620514 TCTTGACAAAGATCTGCATG 37620533 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 21619922 GGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCA-TCTTCAAGCTGCTTGC 21619980 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || ||||||||||||||||| |||||| | Sbjct 21619981 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTT 21620040 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||| || || | ||||| ||| || || || || | Sbjct 21620041 TGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGG 21620100 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 21620101 TCTTGACAAAGATCTGCAT 21620119 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || || ||||| |||| Sbjct 37620563 GGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 37620621 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| |||||||||||||||||||| |||||| | Sbjct 37620622 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTT 37620681 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||| || || | ||||| ||| || || || || | Sbjct 37620682 TCACGTTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGG 37620741 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 37620742 TCTTGACAAAGATCTGCATG 37620761 >seq4 Length=75030901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||||| || ||||| |||||||| | ||| || |||| | |||| ||| Sbjct 61475788 ATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCTTCAGCCAGAAGATG 61475847 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 || |||||| || || ||||| | ||||||||| |||||||| |||| ||||| Sbjct 61475848 GCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAGGCCACCACACGCTC 61475906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483385165844280