Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 4e-15 seq18 89.7 6e-13 >seq16 Length=39628156 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 176968 AGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATG 177027 |||||| |||||| || |||||||| || ||| | ||||| || |||| || |||| Sbjct 25096075 AGTCGTCCACGTGGATAAAAGCGTCCCCTTGGATAAAGTTTTCATAGTTCTGCCTGGATG 25096134 Query 177028 TTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGG----TAGAGTTTTTCGGTA 177083 | || || |||| ||||| | || | ||||| ||| || |||||||| || Sbjct 25096135 TGCCAAGAACTACTGGTACTGTCCCCAC----AGAGAGCGGGACATATAGTTTTTCTGTG 25096190 Query 177084 ATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAG--ATAGTA 177141 ||||||||| |||| | ||||||||||| | | |||||| |||||| || || || Sbjct 25096191 ATATAGTCCTTGTGGATAGAGTTCTCAAAAGACAAATAGAACTTACAGCTAGCCATGGT- 25096249 Query 177142 GCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATAT 177201 |||||| |||| | || | | || ||||| | | | ||||| |||| | | Sbjct 25096250 -GGGGATGTAGTCCTGGTCAGAGACATGTTCTCCAAAGGCTTGTCCGTACGCATGAACCT 25096308 Query 177202 CTATGTGTTT 177211 | |||||||| Sbjct 25096309 CAATGTGTTT 25096318 >seq18 Length=37194005 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| | ||||| || || || ||||| ||| ||||| || || | ||| Sbjct 23492215 CGAACCATCTCCAAGTTGGTTTTCAGAGGGAAGTCCTGGCCACAGAGGTTGATGAAGTAT 23492156 Query 162700 TTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGA 162759 ||||| || | ||| ||| || || | |||||||||||| || ||||||||| Sbjct 23492155 TTCCATTTGGCACTGCCATAGTAAAGGTCAGCCATACAGTTCAGATCAGCTTGGACGCGA 23492096 Query 162760 CTCCACGACGCGTACACGACGCTCTCCAACCTAG-TGGCGACAAAGACATTGTCGAAACA 162818 ||| |||||||| || || || ||| | || | | ||||| ||| |||||| Sbjct 23492095 GACCAGCCAGCGTACACAACACTGACC-GCCTCGCTGACCATGAAGACGTTGGGGAAACA 23492037 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | ||| || | |||| | | ||| | || ||||| || Sbjct 23492036 GGAAGTGATGGCCTGGATGGCAGATGTTACAGACGGGGCAGATTTTTTGTCCACGTGGAC 23491977 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTA 162916 || || | ||||||||| || |||||||||| ||||| Sbjct 23491976 ACAATAAATATTCTGAGGTGCATAGATGGCCCGCAGTA 23491939 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/319 (66%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 162603 CTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTT 162662 ||| || ||||| | ||| || | || |||| || |||||||| | ||||| || Sbjct 23473507 CTCCAGGCTGTTGCTGCCCTTCAGTGACTGCAGCATTCGAACCATCTCCAAGTTGGTTTT 23473448 Query 162663 AAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA 162722 || || ||||| ||| ||||| || || | |||||||| || ||| ||| Sbjct 23473447 CAGAGGGAAGTCCTGGCCACAGAGGTTGATGAAGTATTTCCATTTGGTACTGGCGTTGTA 23473388 Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 || || | |||||||||||| || ||||| ||| ||| |||||||| || || Sbjct 23473387 GAGGTCAGCCATACAGTTCAGATCAGCTTGGACACGAGACCAGCCAGCGTACACAACACT 23473328 Query 162783 CTCCAACCTAG-TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 || ||| | || | | ||||| ||| |||||| ||| || ||| | ||| Sbjct 23473327 GACC-GCCTCGCTGACCATGAAGACGTTGGGGAAACAGGAAGTGATGGCCAGGATGGCGG 23473269 Query 162842 GTG----AGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 || |||| ||| | | ||| | || ||||| || || || | ||||||||| Sbjct 23473268 ATGTTACAGAA----GGGGCAGATTTTTTGTCCACGTGGACACAATAAATATTCTGAGGT 23473213 Query 162898 GCGTAGATGGCCCTCAGTA 162916 || |||||||||| ||||| Sbjct 23473212 GCATAGATGGCCCGCAGTA 23473194 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/319 (66%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 162603 CTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTT 162662 ||| || ||||| | ||| || | || |||| || |||||||| | ||||| || Sbjct 23485073 CTCCAGGCTGTTGCTGCCCTTCAGTGACTGCAGCATTCGAACCATCTCCAAGTTGGTTTT 23485014 Query 162663 AAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA 162722 || || ||||| ||| ||||| || || | |||||||| || ||| ||| Sbjct 23485013 CAGAGGGAAGTCCTGGCCACAGAGGTTGATGAAGTATTTCCATTTGGTACTGGCGTTGTA 23484954 Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 || || | |||||||||||| || ||||| ||| ||| |||||||| || || Sbjct 23484953 GAGGTCAGCCATACAGTTCAGATCAGCTTGGACACGAGACCAGCCAGCGTACACAACACT 23484894 Query 162783 CTCCAACCTAG-TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 || ||| | || | | ||||| ||| |||||| ||| || ||| | ||| Sbjct 23484893 GACC-GCCTCGCTGACCATGAAGACGTTGGGGAAACAGGAAGTGATGGCCAGGATGGCGG 23484835 Query 162842 GTG----AGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 || |||| ||| | | ||| | || ||||| || || || | ||||||||| Sbjct 23484834 ATGTTACAGAA----GGGGCAGATTTTTTGTCCACGTGGACACAATAAATATTCTGAGGT 23484779 Query 162898 GCGTAGATGGCCCTCAGTA 162916 || |||||||||| ||||| Sbjct 23484778 GCATAGATGGCCCGCAGTA 23484760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578389362331200