Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 145 7e-30 seq11 82.4 7e-11 >seq6 Length=67274854 Score = 145 bits (160), Expect = 7e-30 Identities = 805/1264 (64%), Gaps = 48/1264 (4%) Strand=Plus/Plus Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 || ||||| ||||| || || | ||||| ||||| || || || ||||||| | Sbjct 22087487 TCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAAC 22087546 Query 147232 GTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290 || ||| ||| ||| |||| ||| |||| || | |||||||| |||||||| || Sbjct 22087547 TGAGCCTCTGGGCTTTCG-AAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTG 22087605 Query 147291 GATACCGACGCCGATAGGTCGATGCTTTTCG-TTGCTGCGCTTCGC-GCTC--GCTATGG 147346 | || | || || || | || || ||| || |||| | ||| | | | Sbjct 22087606 AACTCCAATTCCTATTGGCCTGTGG----CGCTTGTTGGACTTCTCAGCTTCAGGAACTG 22087661 Query 147347 GATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTT 147406 | |||| |||| ||||| | |||||||||||| || | |||||| || | | | Sbjct 22087662 GGTAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAGATG 22087721 Query 147407 TGAGTTTCTCGAAATCATAAGTCCCGTCTTC-GACACGTACGCATTGGTTCACGGCGATA 147465 || |||| ||| ||| |||||| ||| | |||||| || ||| | || || Sbjct 22087722 CCAGCTTCTTGAAGTCAAAAGTCCGTTCTGGTGTGACGTAC--AT--GTTGAGAGCAATG 22087777 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || || || || || || ||| ||| || | | |||||| || | ||||| |||| Sbjct 22087778 GAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCAC 22087837 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 |||||||||||||| ||| |||| ||| ||||| || || |||| || || || ||| Sbjct 22087838 AGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCT 22087897 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGC 147642 ||| | |||||||| || || || || || | |||| || | ||| Sbjct 22087898 TTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACC---AG 22087954 Query 147643 AGGTCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTAC 147699 || | ||| || || ||| |||| | | ||||||||||| || |||| Sbjct 22087955 AGCTGCTGAGCCTTCACCACACGCTTC---ACCCTCCCCTCGTTTTCATATTTAGTGTAC 22088011 Query 147700 AACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATC 147759 | |||||||| || || |||| ||| | || || ||||||| | |||||||| Sbjct 22088012 AGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGACACATT 22088071 Query 147760 AGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCG 147819 || ||||| | | || | || | ||| |||||||| || | |||||| || Sbjct 22088072 AGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCACAGGGCA 22088131 Query 147820 TACATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA 147877 || | || || | || || ||| ||||| || |||| |||| | || | Sbjct 22088132 TAGAAGAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGA 22088189 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCT 147934 | | | | || |||||| || || | ||| | ||| | || || | | | Sbjct 22088190 AGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGT 22088249 Query 147935 TTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 | || ||||| || |||| ||| | | ||||| | || | || |||||| |||| | Sbjct 22088250 TCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGGCACCAGCC 22088309 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 || | | | || ||||| | ||| | ||| ||| | || | | || Sbjct 22088310 CGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCGGTTGATCTGATACAGCTGACCG 22088369 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGT 148111 ||||||||||| ||| || | || || ||| || || | || || |||| | Sbjct 22088370 CCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACT-GCTTAAGAGTGTC--AT 22088426 Query 148112 AGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAA 148171 | ||||| ||||||||||||| ||| | | | || | || || ||| || || Sbjct 22088427 AAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGG-- 22088484 Query 148172 TCCG---CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCA 148228 ||| ||||| || ||| ||||| || ||||| || ||| | || | || Sbjct 22088485 -CCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAACCACTTCTCTGACA 22088543 Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGC-CGTGAATGCCCAGCGCGACG 148287 || | ||||||||||| || | |||||||| || | | || || || | | || Sbjct 22088544 GCAGGTTGTACGTCTCAATGGCTGCATCGATGTC-TCTCTCATGGATCCCAACAGACACC 22088602 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 | ||||||||||||||| || || ||||| |||| |||||||| || ||||| Sbjct 22088603 CTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATTGATCTTCAGCAGATAGGAG 22088662 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCC 148407 || ||||||||| | || ||| | |||||| |||||| |||||| |||||| Sbjct 22088663 CGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATCTCTGTCGTAAATTATGGCC 22088722 Query 148408 GCAT 148411 | || Sbjct 22088723 GAAT 22088726 >seq11 Length=48234189 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || || || | |||||| |||||| |||| ||| |||| || ||||| | Sbjct 16878773 TGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGGT 16878714 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||| ||||| ||||| ||| ||||||||||||| Sbjct 16878713 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 16878674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476576067796920