Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 9e-16 seq41 91.5 1e-13 >seq11 Length=48234189 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || | || || |||||||| || ||||| Sbjct 21619928 CTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 21619987 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| || | | | Sbjct 21619988 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 21620047 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || || | || || || Sbjct 21620048 CTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGAC 21620107 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 21620108 AAAGATCTGCATTC 21620121 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || | || || |||||||| || ||||| Sbjct 37620341 CTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 37620400 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| || | | | Sbjct 37620401 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 37620460 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || ||||| || | || || || Sbjct 37620461 CTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGAC 37620520 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 37620521 AAAGATCTGCAT 37620532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || | || || |||||||| || ||||| Sbjct 21620156 CTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAA 21620215 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| || | | | Sbjct 21620216 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 21620275 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || || | || || || Sbjct 21620276 CTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGAC 21620335 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 21620336 AAAGATCTGCAT 21620347 >seq41 Length=128785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 44304 GTAGGATGTATGTGGTCCATTTGCGGTGTCCACGAC-AGGGCGTGGCGAGAGCTACCCAT 44362 ||||| |||||||||||||| || || |||| ||| ||||| ||| |||| |||| | Sbjct 55167 GTAGGCTGTATGTGGTCCATCTGTGGGATCCATGACCAGGGC-TGGTCAGAGAGACCCGT 55109 Query 44363 CTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 || || ||| | ||||||||||||||||| || ||| | | ||||||||||| Sbjct 55108 CTTTGGGAAAATCCGCTACATGAACTACAAAGGCTGCCTTCGGAAGTTTGATGT 55055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450760370876760