Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq6 93.3 4e-14 >seq11 Length=48234189 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || |||| || ||||| || ||||| ||||| |||||||||||||| Sbjct 37620304 TTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTG 37620363 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || | Sbjct 37620364 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 37620423 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || |||||| || | ||||| | || | Sbjct 37620424 GGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGA 37620483 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| ||||| || | || || || || || ||||| Sbjct 37620484 CCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 ||| || ||||| | || | |||||||| | |||||||||||| ||||| ||||| || Sbjct 16878640 CGCTATCATCGAGTCGCAGACAGAAACCGGAACGCCGTACATGCTCTACAAGGACGCCTG 16878699 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || ||| ||||||||||| | ||||||||||||| |||| Sbjct 16878700 CAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATTAAATCCAGCAATCTGTGCACTGA 16878759 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 16878760 GATAGTAGAGTACA 16878773 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || |||| || ||||| || ||||| ||||| |||||||||||||| Sbjct 21620119 TTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTG 21620178 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || | Sbjct 21620179 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 21620238 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || |||||| || | ||||| | || | Sbjct 21620239 GGATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGA 21620298 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || | || || || || || ||||| Sbjct 21620299 CCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCAT 21620347 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || ||||| ||||| |||||||||||||| Sbjct 21619893 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 21619952 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 21619953 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGG 21620012 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || |||||| || | ||||| | || || Sbjct 21620013 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACC 21620072 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || | || || || || || |||||| Sbjct 21620073 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCATT 21620120 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 37620534 CCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 37620593 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 37620594 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 37620653 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||| || || | ||||| | || || Sbjct 37620654 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAACC 37620713 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| ||||| || | || || || || || ||||| || Sbjct 37620714 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 37620763 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || ||| ||||| || |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 37619877 CTGTCCGCCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 37619936 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | ||| | || || ||||||||||| ||||| |||| | |||||| || || Sbjct 37619937 TGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 37619996 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTT 134629 || |||||||| || || || || || Sbjct 37619997 AGGGATGCCTTCCTTGTCCTGGATCTT 37620023 >seq6 Length=67274854 Score = 93.3 bits (102), Expect = 4e-14 Identities = 271/417 (65%), Gaps = 9/417 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| || | ||| | || || || || | |||||| || || ||| | Sbjct 22088619 CAGCACATGCTCATGAGGGTGTCTGTTGGGATCCATGAGAGAGACATCGATGCAGCCATT 22088560 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | || |||| ||| ||| || ||||| || || ||| | || | Sbjct 22088559 GAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCACCAACCCTCTTCAAC 22088500 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || ||| ||| || ||||| || || | || ||||| || |||||| Sbjct 22088499 GCAGGAACCAACCGGCCACAGCTGTCCAGCTGCTTCCTCCTCGCCATGAAAGACGACAGC 22088440 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 ||||| |||||||| |||| || | || ||| |||||||||| || ||| || Sbjct 22088439 ATCGAAGGCATTTATGACACTCTTAAGCAGTGTGCCCTCATTTCCAAATCCGCCGGAGGC 22088380 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863 || || || || | | | | | | ||| ||| ||||| ||||| || Sbjct 22088379 ATTGGCGTGGCGGTCAGCTGTATCAGATCAACCGGGAGCTACATCGCTGGTACCAATGGT 22088320 Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923 || ||| ||| | | |||||||||| | || | ||| || | | || |||| || Sbjct 22088319 AACTCCAACGGGCTGGTGCCCATGTTGAGAGTTTACAACAATACTGCTCGCTATGTTGAT 22088260 Query 7924 CAGGGGGGAAAGCGCAAA------GGCGCCGCTGCCATCTATTTGGAGCCGTGGCAC 7974 |||||||| || |||| || ||| |||||| || ||||||| |||||| Sbjct 22088259 CAGGGGGGGAA---CAAAAGACCTGGAGCCTTTGCCATGTACCTGGAGCCATGGCAC 22088206 Score = 86.0 bits (94), Expect = 6e-12 Identities = 259/398 (65%), Gaps = 4/398 (1%) Strand=Plus/Minus Query 8542 TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCC 8601 || |||| ||||||||| || | || | || || |||||| |||| || || || | Sbjct 22087641 TCCAACAAGCGCCACAGGCCAATAGGAATTGGAGTTCAAGGTTTGGCAGATGCCTTCATC 22087582 Query 8602 ATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAA 8661 || |||| |||| |||||||| ||| || | |||| ||||| | || || Sbjct 22087581 CTGATGCGTTATCCCTTCGAAAGCCCAGAGGCTCAGTTGCTAAACATCCAGATTTTTGAG 22087522 Query 8662 ACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGC--CCGAGAATTGGGCACGT 8719 || | || |||| || | || || ||||| | || || ||||| || || ||| Sbjct 22087521 ACCATCTACTACGCTGCTCTGGAGGCGAGCTGCGAGCTAGCTGCCGAG--TTCGGACCGT 22087464 Query 8720 ACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATG 8779 |||| | |||| || ||||| |||| || || ||||||||||||||||| | Sbjct 22087463 ACGAGACCTACGAAGGTTCCCCTGTCAGCAAGGGCATCCTGCAATACGACATGTGGGACA 22087404 Query 8780 TCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTT 8839 ||||| || ||||| | |||| ||||| || || ||| || || Sbjct 22087403 AGACGCCTACAGACCTGTGGGACTGGAAGCTGCTGAAAGAGAAGATCGCTAAACATGGCG 22087344 Query 8840 TGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAA 8899 || | ||| ||| || | || |||||||| || | || || || || |||| | Sbjct 22087343 TGAGAAATAGCCTGCTGCTCGCCCCGATGCCCACAGCGTCCACCGCCCAGATCCTGGGTA 22087284 Query 8900 ACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 ||||||| ||| | || | | ||||| |||| | ||| Sbjct 22087283 ACAACGAGTCCATCGAAGCCTACACCAGCAACATCTAC 22087246 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 |||||||| || | || | ||||| || | ||| ||||||||||||||||| || || Sbjct 22087947 GCCATTATTGAGTCCCAGACAGAAACGGGAACGCCATACATGCTGTACAAAGATGCATGT 22087888 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| || || || || || |||||||||| |||||||| |||||| | ||| Sbjct 22087887 AACAGGAAGAGTAACCAGCAGAATCTGGGCACCATCAAATGCAGCAACCTGTGCACCGAA 22087828 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 |||| |||||| | ||||| ||||| || || || || || || Sbjct 22087827 GTTGTTGAGTACACCAGCAAAGACGAGGTGGCGGTGTGTAACCTTGCCTC 22087778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505361145820440