Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq17 105 1e-17 seq11 95.1 2e-14 >seq17 Length=38284538 Score = 105 bits (116), Expect = 1e-17 Identities = 187/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || || || |||| | |||||||| | ||||||||| | || ||||| || |||||| Sbjct 12838816 AAAGAAATGGCTGCCTTGCTGGAGGAGATGTACGGTGATGTAGATGCCGTGGAGCTCTAC 12838875 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCG-TCCTCGA 214723 ||| | | || | || ||||| | ||| | |||||| |||| || | || | | || Sbjct 12838876 CCTGGTCTGCTGGTGGAGAAACCCCGACCCAACGCCATCTTCGGGGA-GACGATGGTGGA 12838934 Query 214724 GTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTA 214783 | ||| ||||| ||||| || | || || || ||| |||||||||||||| || Sbjct 12838935 GATGGGCGCTCCTTTCTCACTCAAAGGCCTGATGGGGAATCCCATCTGCTCCCCGGAGTA 12838994 Query 214784 CTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCT 214843 |||||| | || ||| | || || || | | ||| ||||||| | ||||| |||| Sbjct 12838995 CTGGAAGCCCAGCACCTTTGGAGGCAGCGTGGGCTTCGACATCGTCAACAGCGCCTCCCT 12839054 Query 214844 TCAGTCTCTCATCTGTAGCAACGTCAAGGG 214873 ||| ||| |||| | ||| || |||| Sbjct 12839055 GCAGAAGCTCGTCTGCAACAATGTGCAGGG 12839084 >seq11 Length=48234189 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 213992 TACCAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATG 214051 || ||| | || || || || | |||||||||| | |||| || ||||| ||| Sbjct 116334 TAACAGGTGATAGATGGTGAGATGTACCCTCCTAAAACCTCTGAGGTCCCTGTGCACATG 116393 Query 214052 GTTTAC---GAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTT 214108 || ||| ||| || | ||||| || ||| | || | ||| | ||| |||| Sbjct 116394 GTGTACCCTGAAG---GCTTCCCCGATGAGCAGCGTCTGGCCATCGGTCAGGAGGTGTTC 116450 Query 214109 GGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTT 214168 || ||| |||| || ||| ||||||||| |||||| |||| ||||||||||| || Sbjct 116451 GGCCTCCTGCCGGGCCTCACCATGTACGCCACCATCTGGTTGAGGGAGCACAACAGAGTC 116510 Query 214169 TGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCAC 214227 |||||| | ||||| ||| || || ||| |||| || ||||||||||| | ||| Sbjct 116511 TGCGACATCCTGAAGACAGAACATCCAACGTGGGACGATGAGCAGCTGTTCCAAACCAC 116569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723287480741280