Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 556 2e-153 seq19 98.7 1e-15 seq11 98.7 1e-15 >seq6 Length=67274854 Score = 556 bits (616), Expect = 2e-153 Identities = 1295/1944 (67%), Gaps = 23/1944 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| ||||||| | || | || || || |||||| Sbjct 22087151 TTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTA 22087210 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || ||||| | || || |||||||| || || ||||| || | ||| Sbjct 22087211 ACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCTTCG 22087270 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || || | || Sbjct 22087271 ATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGCAGC 22087330 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | |||||||| | |||||| | ||| || ||||| || | ||||| ||||| || Sbjct 22087331 AGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCACAGG 22087390 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | |||||||| || || || || || || || || Sbjct 22087391 TCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAACCT 22087450 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || ||||| || ||||||| || || || ||||| | ||| || Sbjct 22087451 TCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCAGCG 22087510 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || ||||||| | || || || || ||| | || ||||| ||| Sbjct 22087511 TAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAGGGA 22087570 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || ||||||||||| || ||||| ||||| || || || || || Sbjct 22087571 TAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTGTGG 22087630 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | |||||||| |||| || || || || || || || | || || Sbjct 22087631 CGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTTGTTG 22087690 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TCGTCCA 69249 || ||| ||| | ||||| ||| || || || ||||| ||| | Sbjct 22087691 AGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAAGTCCGTTCT 22087750 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | | || |||| || || || | || || || ||||| || || ||||| | Sbjct 22087751 GGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTC----GTC 22087806 Query 69310 TTTGCATATTGTATT-----ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 ||||| | |||| | | || || || || || || |||||||| || ||||||| Sbjct 22087807 TTTGC-TGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGAT 22087865 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 | ||||| |||||||| ||||||| || || ||||| || || | || || || |||| Sbjct 22087866 TCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTT 22087925 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC 69484 | |||| || || ||||| | | ||| | | ||| || | || ||| | Sbjct 22087926 CTGTCTGGGACTCAATAATGGCATACCAGAGCTGCTGAGCCTTCACCACACGCTTCACCC 22087985 Query 69485 GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | ||| |||||||||| || || || ||| || || || ||||| || |||| Sbjct 22087986 TCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCA 22088045 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 |||||||| || || |||||||| | ||||| | | | || |||| |||| Sbjct 22088046 GCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCA 22088105 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 | || ||||| |||||||| || || ||| ||||| ||||||| ||| | || || ||| Sbjct 22088106 TGAACAGATCTGGAATCCACAGGGC-ATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTT 22088164 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 ||||| || || || || || || || || | | |||| | |||||||| || || || Sbjct 22088165 CCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTAC 22088224 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | |||| |||| ||| || || |||||||| | || | ||||| || || Sbjct 22088225 ATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTG 22088284 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || ||||||| ||| || | | || || || |||||||| || |||| || || || Sbjct 22088285 TAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTC 22088344 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 || ||| | ||| || | | | || || ||||| || ||| || || || Sbjct 22088345 CCGGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGG 22088404 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 ||||| | || | |||||||| || || || ||||| || ||| ||||| || || Sbjct 22088405 GCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGG 22088464 Query 69964 AAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 || ||||| |||| || | | | ||||| || || || | || || || ||||| Sbjct 22088465 AAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGG 22088524 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || || || ||||| ||||| || ||||| |||| || || || | || | Sbjct 22088525 GTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTCA 22088584 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || || || | | || | ||| | ||| ||||| || || || || ||| ||| Sbjct 22088585 TGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATTG 22088644 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || |||| ||| || || ||||| ||||| || || || ||||||| || || ||| Sbjct 22088645 ATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATCT 22088704 Query 70204 CTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACA 70263 || |||||||| || | ||||| || || || | | ||| || | | | Sbjct 22088705 CTGTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGT---TGAGC 22088761 Query 70264 GT---AGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAA 70320 || |||||| || || || | | || |||||| | |||||| | | Sbjct 22088762 GTCTCTTTTGAGATCATGGGGGAGTGCTGCTTGTTCAGAGGATTGATGTAGTTGTACAGG 22088821 Query 70321 TCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATT 70380 |||||||| || |||||||| | |||||| || || ||||| | ||||| | || || Sbjct 22088822 TCTTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAGCGATC 22088881 Query 70381 CTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCA 70440 || || || ||||| |||||||| || |||| || || || || || ||||| || Sbjct 22088882 CTTGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTTCGGCT 22088941 Query 70441 GCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATG 70500 || | ||| || | || | ||| || || ||| | || | || || || || ||||| Sbjct 22088942 GCCAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATT 22089001 Query 70501 GCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACG 70559 | |||| ||||| | ||| |||| || ||||| || || || |||| || || Sbjct 22089002 GTGATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGGATGCG 22089060 Query 70560 AGATGTAATTTTATCAAACATAAC 70583 ||| || |||||||||||||| || Sbjct 22089061 AGAGGTGATTTTATCAAACATGAC 22089084 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||| || | |||||| ||| |||| || || || || || | Sbjct 22086857 TCCAACCGTAGAAGTGCATGCTGGATAGTTTTCCATAGTTTGGCTCTGCGATGTGGATGT 22086916 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||| || || || || ||| | || || | || || ||||| |||| | | ||| Sbjct 22086917 TCAGCGACTGGCTCTGGTCTATGTAGGCACCACGGTCGGCAGCCATCTTTAATACAGTCT 22086976 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||||| ||| ||| | | ||| || | ||||||||||| Sbjct 22086977 TCTGGGAGATTTCCCAAACAGTTTTATACAGCTGCTTCAAATCATCTGGAA 22087027 >seq19 Length=25483538 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||||| || ||||| |||||||| ||||| | ||| || Sbjct 15261977 TCATCCCTGCTGATCAGCTCGTTGGAGTGGGTGAGGCCAGGCATCAGACCCCTCTTCTTC 15262036 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| | ||||||||||| || || || ||||||| ||| || || |||||||| || Sbjct 15262037 AGCCAGTAGATGGCAGCAAACGAGCCCGAGAAGAAGACGCCCTCCACAGCTGCAAAAGCC 15262096 Query 39761 ACAAGTCTCTCTCC 39774 ||||| | |||||| Sbjct 15262097 ACAAGCCGCTCTCC 15262110 >seq11 Length=48234189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 69297 TACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGT 69356 |||||||| |||| || | || |||||| || || ||||| || |||| || || Sbjct 16878790 TACCTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGT 16878731 Query 69357 CCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGT 69416 ||||| || ||||| || ||||| |||| |||||||||||||| || || |||| || Sbjct 16878730 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 16878671 Query 69417 ACCAGTTTCAATCTGAGATTCGATAATAG 69445 || ||||| |||| || ||||| |||| Sbjct 16878670 TCCGGTTTCTGTCTGCGACTCGATGATAG 16878642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686858166235080