Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 141 8e-29 >seq6 Length=67274854 Score = 141 bits (156), Expect = 8e-29 Identities = 422/639 (66%), Gaps = 23/639 (4%) Strand=Plus/Plus Query 131369 TACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTG 131428 |||| ||||| ||||| ||||| || |||| || |||||||||| ||| || || || Sbjct 22087817 TACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTA 22087876 Query 131429 CTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGT 131487 || || || ||||| || ||||||| |||||| ||||| |||||||| || | Sbjct 22087877 CTCTTCCTGTT-ACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGA 22087935 Query 131488 TTCAATAATG---TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTAT-TGGCCGC 131543 ||||||||| || | |||| | |||| || | || | || | Sbjct 22087936 CTCAATAATGGCATACC---AGAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTC 22087992 Query 131544 GTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACT-GTCCAAATTG 131602 ||||| | || || ||||| ||||||| | | || | | ||| ||||| Sbjct 22087993 GTTTT-CATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCA 22088050 Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 ||||| ||| ||||||||||||| ||||| ||| || |||| |||||| ||| Sbjct 22088051 GGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAAC 22088110 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | ||| || | ||| | || || || || ||||| ||| | | ||| || | || | Sbjct 22088111 AGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG 22088170 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 | || |||| | | ||||| || | || ||||| || |||| |||| || Sbjct 22088171 TTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCA 22088230 Query 131783 ATTGCGCC------TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTAT 131836 | || || |||| || || || |||| ||||| ||| | | |||||||| Sbjct 22088231 AAGGCTCCAGGTCTTTTG---TTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAA 22088287 Query 131837 ACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCA 131896 || | |||||||||| ||| ||||||| ||| |||||||| | |||||||| || Sbjct 22088288 ACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCG 22088347 Query 131897 TTGGCTCTGATTTTG-TGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGC 131955 | | |||||| | ||| || | ||||| |||||| || |||| || || || || Sbjct 22088348 GTTGATCTGATACAGCTGACCG-CCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGC 22088406 Query 131956 GCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 || | | ||||||| ||| || ||||| | |||||| Sbjct 22088407 ACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTC 22088445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424903860097464