Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 185 1e-41 seq11 105 8e-18 >seq6 Length=67274854 Score = 185 bits (204), Expect = 1e-41 Identities = 958/1496 (64%), Gaps = 52/1496 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| ||||| || || Sbjct 22087153 CTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTAAC 22087212 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 ||| ||||| || | |||| || | ||||||||| | ||||| | ||| | Sbjct 22087213 AATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCTTCGAT 22087272 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || ||||||| ||| || |||||||| ||||| ||||| || || | || || Sbjct 22087273 GGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGCAGCAG 22087332 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTG 110851 || || | | || | | ||| || || || | | |||||| | | | Sbjct 22087333 GCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCACAGGTC 22087392 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAAC 110909 | | || || | |||||||||| | || || | |||||| ||| |||| || Sbjct 22087393 TG-TAGGCGTCTTGT-CCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGA--AC 22087448 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | || |||| || || | || | |||| | || |||||||||||||| | | Sbjct 22087449 CTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCAG 22087508 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| ||||| || | || | | || || || || || | Sbjct 22087509 CGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAGG 22087568 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 || || || || || |||| || | ||||||||| || | || || || |||| Sbjct 22087569 GATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTGT 22087628 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || ||||| | ||| ||| || || || | || | |||||||| Sbjct 22087629 GGCGCTTGTTGGACTT---CTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCT 22087685 Query 111147 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA-AGTTTTTCATAATCAAAAGTG 111205 ||| || |||||| || || || || | ||| || || | | |||||||| Sbjct 22087686 TGTTGAGGTTTTTGACAATAACTTTGGTCACAG-ATGCCAGCTTCTTGAAGTCAAAAGTC 22087744 Query 111206 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 111265 || ||| |||| ||| | || || || || || | || || || ||| | Sbjct 22087745 CGT---TCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACC 22087801 Query 111266 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 || || || |||||||| | || ||| || || | |||| | || || || ||| Sbjct 22087802 TCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCC 22087861 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 | ||||| |||||||||||| |||| || ||||| ||||| |||||||| ||||| ||| Sbjct 22087862 AGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCC 22087921 Query 111386 GTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTT 111444 || || ||||| || | | ||| || | ||| | | | | | || || || || Sbjct 22087922 GTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCTGAGCCTTCACCACACGC-TT 22087980 Query 111445 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-T 111503 ||| ||||| || || || ||||| || |||||||||||| ||| | || | Sbjct 22087981 CACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCC-CAGCACT 22088039 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCTTCCTCAA 111560 || || || || || || ||||| | || ||||| ||| || ||| | Sbjct 22088040 CGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCC---A 22088096 Query 111561 CCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCT 111620 | | ||||||||| || |||||||||||||||| | ||||| ||||| | || Sbjct 22088097 CTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCT 22088156 Query 111621 CTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679 | || | ||| ||| || | | ||| ||||| || | | ||| |||||||||| Sbjct 22088157 CCTCCTTTCCTGTGTTCT-TCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGC 22088215 Query 111680 TCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGC 111735 || || || | || | | ||| |||| | ||| || ||| |||||||| || Sbjct 22088216 TCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCT-GATCAACATAGCGAGC 22088274 Query 111736 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC-C 111794 || ||| | || | | ||| || | | || | || | |||||| || || | Sbjct 22088275 AGTATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGC 22088334 Query 111795 GAA-TA---CGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCC 111850 || || | | || || | | ||| | || || ||||| || || || Sbjct 22088335 GATGTAGCTCCCGGTTGATCTGAT---ACAGCT--GACCGCCACGCCAATGCCTCCGGCG 22088389 Query 111851 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 111910 | || || || | ||||||| | ||||||| |||| || || | ||| ||| || Sbjct 22088390 GATTTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCT 22088449 Query 111911 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--GTACCAGCATTGAAGA 111968 || |||||| |||||||| ||||||| ||| || | ||| || || || ||||||| Sbjct 22088450 TTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGCC--GGTTGGTTCCTGCGTTGAAGA 22088507 Query 111969 GGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACA 112027 ||||||||| ||||| ||||| || | | |||| | || ||| ||||| | | | Sbjct 22088508 GGGTTGGTGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCT 22088566 Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | ||| |||||| | | ||||| || | | |||| ||||| ||||| ||| || Sbjct 22088567 GCATCGATGTCTCTCTCATGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGG 22088622 >seq11 Length=48234189 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||||||||| | ||||||||||| || || || || | ||| ||||| || || Sbjct 16878787 CTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCC 16878728 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 16878727 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCC 16878668 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 || || ||||| || | || ||||| | ||| Sbjct 16878667 GGTTTCTGTCTGCGACTCGATGATAGCGTACCA 16878635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627985706191200